RetrogeneDB ID: | retro_fcat_5 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B1:121983285..121983717(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000022472 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS23 | ||
Ensembl ID: | ENSFCAG00000008839 | ||
Aliases: | None | ||
Description: | ribosomal protein S23 [Source:HGNC Symbol;Acc:10410] |
Percent Identity: | 75.52 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | LGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCV |
.GK..GL.TARK.RSH..DQK.H.KQY..AHLGTALKAN.FGGASHAK.IVLEK.G.EAKQPNSAIRKC. | |
Retrocopy | MGKYLGLHTARKCRSHLGDQKRHGKQYREAHLGTALKANAFGGASHAKEIVLEKIGAEAKQPNSAIRKCD |
Parental | RVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKER |
RVQLI.NG.KITAFVPND.CLNF.EEND.V.V.GFG.KGHA..DIPG.....V..A.VSLL.LYKGKKER | |
Retrocopy | RVQLIENGQKITAFVPNDSCLNFTEENDDVPVGGFGHKGHAISDIPGFGSNIVRTARVSLLTLYKGKKER |
Parental | PRS |
PRS | |
Retrocopy | PRS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 68 .40 RPM |
SRP017611_kidney | 0 .00 RPM | 285 .57 RPM |
SRP017611_liver | 0 .00 RPM | 97 .15 RPM |