RetrogeneDB ID: | retro_rnor_1941 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 3:174062679..174063024(-) | ||
Located in intron of: | ENSRNOG00000012906 | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000031483 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rps23 | ||
Ensembl ID: | ENSRNOG00000016580 | ||
Aliases: | None | ||
Description: | 40S ribosomal protein S23 [Source:UniProtKB/Swiss-Prot;Acc:P62268] |
Percent Identity: | 95.65 % |
Parental protein coverage: | 80.42 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCV |
M.KCRGLRTA.KLRSHRRDQK.HDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAI.KCV | |
Retrocopy | MDKCRGLRTAQKLRSHRRDQKRHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIQKCV |
Parental | RVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDI |
RVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFG.KGHAVGDI | |
Retrocopy | RVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGHKGHAVGDI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .22 RPM | 86 .92 RPM |
SRP017611_kidney | 0 .21 RPM | 102 .02 RPM |
SRP017611_liver | 0 .00 RPM | 73 .83 RPM |