RetrogeneDB ID: | retro_fcat_1876 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | JH408690.1:399428..399754(+) | ||
Located in intron of: | ENSFCAG00000007618 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS23 | ||
Ensembl ID: | ENSFCAG00000008839 | ||
Aliases: | None | ||
Description: | ribosomal protein S23 [Source:HGNC Symbol;Acc:10410] |
Percent Identity: | 75. % |
Parental protein coverage: | 75.52 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | LKANPFGGASHAKGI-VLEKVGVEAKQPNSAIRKCVRVQLIKNGKK-ITAFVPNDGCLNFIEENDEVLVA |
LKANP.GGASHA.G..V.EKVGVE..QPNSAIRKC.RVQLIKN.K..I.AFVPNDGCLNFIEEN.EVLVA | |
Retrocopy | LKANPCGGASHAQGM<VPEKVGVETRQPNSAIRKCIRVQLIKNDKR>ISAFVPNDGCLNFIEENYEVLVA |
Parental | GFGRKGHAVGDIPGVRFKVVKVANVSLLALY-KGK-KERPRS |
GFG.KGHAVGD.PGVR.KV......SLL..Y.K.K..ERPRS | |
Retrocopy | GFGHKGHAVGDTPGVRLKVLSK*PMSLLWPYTKAK<MERPRS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .69 RPM | 68 .40 RPM |
SRP017611_kidney | 0 .93 RPM | 285 .57 RPM |
SRP017611_liver | 0 .71 RPM | 97 .15 RPM |