Parental gene:

OGLUM01G48550

Aliases:None
Description:None
Organism:Oryza glumaepatula
Coordinates:1:45222971..45227182(-)


>OGLUM01G48550
ATGGCGGTTCGCCGCCGGCGACCCGGCCCCGTGGCGGCCGCCGTGCTGCTGCTACTCGCGGTGGCGACCCAGGCGGCGGC
GAGCCCGATAAAGACGGTGGTGGTGGTGGTGATGGAGAACCGGTCGTTCGACCACATGCTGGGGTGGATGAAGCGGCTGA
ACCCGGAGATCGACGGCGTGACCGGCGGCGAGTGGAACCCGACGAACGCCAGCGACCCGTCGTCGGGGCGCGTCTACTTC
GGCGAGGGCGCCGAGTACGTGGACCCAGACCCGGGCCACTCGTTCCAGGAGATCCGGCAGCAGATATTCGGGTCGGACGA
CGCGTCGGGGCCGGCGAGGATGGACGGCTTCGTGCAGCAGGCGCGGTCGCTGGGGGACAACATGACAGCGGCCGTCATGA
ACGGCTTCTCGCCGGACAGCGTCGCCGTGTACCGGGAGCTCGTCGGGGAGTTCGCGGTGTTCGACCGGTGGTTCGCGTCC
GTGCCGTCGTCGACGCAGCCCAACCGACTGTTCGTGCACTCCGCCACATCCGGCGGCGCCACCAGCAACAACCCAGAGCT
GCTGGCGAAGGGCTACCCGCAGCGTACAATCTTCGACAACGTGCACGACGCCGGGCTGTCGTTCGGGGTCTACTACCAGG
ACGTGCCGGCGGTGCTCTTCTACCGCAACCTGCGGAAGCTCAAGTACCTGACCAAGTTCCACCCGTTCCACGGCGCGTTC
CGCGACCACGCCGCCCGCGGCTCCCTCCCAAACTACGCCGTGGTGGAGCAGCACTACATGGACTCCAAGTCCCACCCGGC
CAACGACGACCACCCGTCGCACGACGTCTTCCAGGGCCAGATGCTCGTCAAGGAGGTGTACGAGACGCTCCGCGCCAGCC
CGCAGTGGAACCAGACGCTCATGGTCGTCACCTACGACGAGCACGGCGGCTTCTACGACCATGTCCCCACCCCCGTCACC
GGCGTCCCCAGCCCCGACGGCATCGTCGGCCCGCCGCCGTATAACTTCGCCTTTGATCGCCTCGGCGTCCGTGTCCCAGC
CATCGTCATCTCCCCCTGGATCAACAAGGGTACAGTTGTTCATGGGCCAAACGGGAGCCCAACCGCGACGTCGGAGTACG
AGCACTCGTCCATCCCCGCGACCGTGAAGAAACTCTTCGATCTGCCACAGGATTTCCTGACAAAAAGGGACGCCTGGGCT
GGAACGTTTGAGAGTGTCGTGCAAGGCAGAACTGAGCCAAGGACGGATTGCCCAGAGCAACTCCCAATGCCGATGAGGAT
ACGGCTGACGGAGGCGAACGAGGAGGCGAAGCTGAGTGAGTTCCAGCAGGAGCTGGTTCAGCTGGCGTCGGTGCTCAACG
GGGACCACCAGCTGAGCAGCCTGCAGGACACGATCAGGGACAGGATGAACGTCAGGGAAGGCATCGCGTACATGCGGGGC
GCTGTAAAGCGCTTCTTCGAGGCCGGCATGTCAGCCAAGAGGATGGGCGTCGACGACGAGCAGATCGTCAAGATGAGGCC
ATCGCTCACCACCAGGACATCCCCTGCGATCGAGCAACCATAG

Species Parental gene accession Homology type Retrogenes number
Oryza sativa indica BGIOSGA000088 ortholog_one2one 1 retrogene
retro_oind_49,
Brachypodium distachyon BRADI2G61140 ortholog_one2one 1 retrogene
retro_bdis_16,
Leersia perrieri LPERR01G38640 ortholog_one2many 1 retrogene
retro_lper_20,
Oryza barthii OBART01G44250 ortholog_one2one 2 retrogenes
retro_obar_19, retro_obar_5,
Oryza glumaepatula OGLUM03G39370 within_species_paralog 1 retrogene
retro_oglu_2,
Oryza nivara ONIVA01G50380 ortholog_one2one 1 retrogene
retro_oniv_1,
Oryza glaberrima ORGLA01G0381200 ortholog_one2one 1 retrogene
retro_ogla_34,
Oryza rufipogon ORUFI01G47680 ortholog_one2one 2 retrogenes
retro_oruf_3, retro_oruf_32,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_oglu_24 55.90 78.27
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Download FASTA sequences of all OGLUM01G48550 retrocopies