RetrogeneDB ID: | retro_amel_1104 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192907.1:857984..858469(+) | ||
Located in intron of: | ENSAMEG00000008861 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAC3 | ||
Ensembl ID: | ENSAMEG00000017364 | ||
Aliases: | None | ||
Description: | ras-related C3 botulinum toxin substrate 3 (rho family, small GTP binding protein Rac3) [Source:HGNC Symbol;Acc:9803] |
Percent Identity: | 73.21 % |
Parental protein coverage: | 86.77 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKW |
F..EY.PTVFDNYSANVMV.GK.VNLGLWDTAGQEDYDRL.PLSYPQTD...ICFSL.SP.SFENVRA.W | |
Retrocopy | FSREYSPTVFDNYSANVMVGGKRVNLGLWDTAGQEDYDRLHPLSYPQTDMVIICFSLLSPSSFENVRARW |
Parental | Y-PEVRHHCPHTPILLVGTKLDLRDDKDTIERLRDKKLAPIT-YPQGLAMAREIGSVKYL-ECSALTQRG |
Y.PEVRHHCP.TPI.LV.TKLDLRD.KD.IE.L...KL.PIT..PQGLA.A.EI...K.L.ECSAL.QRG | |
Retrocopy | Y<PEVRHHCPNTPIILVETKLDLRDNKDVIEQLLE-KLTPIT<QPQGLARAKEISAGKHL<ECSALLQRG |
Parental | LKTVFDEAIRA-VLCPPPVKKPGKKCTV |
L.T..DEA.R...LCPPPVKK...KC.. | |
Retrocopy | LQTEWDEALRG<ILCPPPVKKRKRKCFI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006082 | 1 retrocopy | |
Ailuropoda melanoleuca | ENSAMEG00000009889 | 2 retrocopies | |
Ailuropoda melanoleuca | ENSAMEG00000017364 | 1 retrocopy |
retro_amel_1104 ,
|
Callithrix jacchus | ENSCJAG00000018194 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000013861 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000012902 | 3 retrocopies | |
Macropus eugenii | ENSMEUG00000006196 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000012467 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000009949 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000008763 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000007272 | 4 retrocopies | |
Takifugu rubripes | ENSTRUG00000016201 | 1 retrocopy |