Parental gene:

RAC3, ENSCJAG00000018194

Aliases:None
Description:ras-related C3 botulinum toxin substrate 3 (rho family, small GTP binding protein Rac3) [Source:HGNC Symbol;Acc:9803]
Organism:Marmoset (Callithrix jacchus)
Coordinates:5:131176187..131178379(+)


>ENSCJAG00000018194
ATGCAGGCCATCAAGTGCGTGGTGGTCGGCGACGGCGCCGTGGGGAAGACATGCTTGTTGATCAGCTACACGACCAACGC
CTTCCCCGGAGAGTACATCCCCACCGTTTTTGACAACTACTCTGCCAACGTGATGGTGGACGGGAAGCCGGTCAACCTGG
GGCTGTGGGACACGGCGGGGCAGGAGGACTACGACCGGTTGCGGCCGCTCTCCTACCCCCAAACTGTAGGTGACAACAGG
GCCTGCCCCAGGAGCTGGGTGGGTCCTCACCTTCTTCCCAAGGACGTCTTTCTAATCTGCTTCTCCCTGGTGAGCCCGGC
CTCCTTCGAGAACGTTCGAGCCAAGTGGTACCCAGAGGTGCGGCACCACTGCCCCCACACGCCCATCCTCCTGGTGGGCA
CCAAGCTGGACCTCCGTGATGACAAGGACACCATTGAGCGGCTGCGGGACAAGAAGCTGGCCCCCATTACATACCCACAG
GGCCTGGCTATGGCCCGGGAGATCGGCTCTGTGAAGTACCTGGAGTGCTCAGCCCTGACACAGCGGGGCCTGAAGACAGT
GTTTGACGAGGCGATCCGGGCAGTGCTCTGCCCACCCCCAGTGAAAAAGCCAGGGAAGAAGTGCACTGTCTTCTAG

Library Parental gene expression (RPM)
SRP051959_spleen 0 .25 RPM
SRP051959_skeletal_muscle 0 .11 RPM
SRP051959_lymph_node 0 .73 RPM
SRP051959_lung 0 .55 RPM
SRP051959_liver 11 .61 RPM
SRP051959_kidney 2 .82 RPM
SRP051959_heart 0 .25 RPM
SRP051959_colon 0 .20 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000017364 ortholog_one2one 1 retrogene
retro_amel_1104,
Callithrix jacchus ENSCJAG00000000685 other_paralog 1 retrogene
retro_cjac_2403,
Callithrix jacchus ENSCJAG00000002144 within_species_paralog 4 retrogenes
retro_cjac_1158, retro_cjac_1954, retro_cjac_2917, retro_cjac_847,
Callithrix jacchus ENSCJAG00000005912 other_paralog 6 retrogenes
retro_cjac_1275, retro_cjac_1808, retro_cjac_1826, retro_cjac_2251, retro_cjac_751, retro_cjac_911,
Cavia porcellus ENSCPOG00000013861 ortholog_one2one 1 retrogene
retro_cpor_18,
Echinops telfairi ENSETEG00000012902 ortholog_one2one 3 retrogenes
retro_etel_1565, retro_etel_1645, retro_etel_42,
Macropus eugenii ENSMEUG00000006196 ortholog_one2one 1 retrogene
retro_meug_201,
Otolemur garnettii ENSOGAG00000012467 ortholog_one2one 1 retrogene
retro_ogar_2140,
Procavia capensis ENSPCAG00000009949 ortholog_one2one 1 retrogene
retro_pcap_16,
Pongo abelii ENSPPYG00000008763 ortholog_one2one 2 retrogenes
retro_pabe_1047, retro_pabe_2546,
Tupaia belangeri ENSTBEG00000007272 possible_ortholog 4 retrogenes
retro_tbel_1796, retro_tbel_2564, retro_tbel_4296, retro_tbel_9,
Takifugu rubripes ENSTRUG00000016201 possible_ortholog 1 retrogene
retro_trub_15,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2687 54.17 56.40
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Download FASTA sequences of all ENSCJAG00000018194 retrocopies