RetrogeneDB ID: | retro_cpor_18 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_103:3705302..3705878(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCPOG00000021968 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAC3 | ||
Ensembl ID: | ENSCPOG00000013861 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 70.16 % |
Parental protein coverage: | 99.48 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPL |
MQ.IKCVVVGDGAVGKTCLLI.YTTNAFP.EYIPTVFDNYSA...VDG..VNL.LWDTAGQE.YDRLR.L | |
Retrocopy | MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDTAGQEEYDRLRTL |
Parental | SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDKDTIERLRDKKLAPITYP |
SYPQT.VF.ICFS..SP.S.ENVR.KW.PEV.HHCP..PILLVGTK.DLR...DT..RL.....APIT.. | |
Retrocopy | SYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDLRAQPDTLRRLKEQGQAPITPQ |
Parental | QGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVLCPPPVKKPGKKCTV |
QG.A.A..I..V.YLECSAL.Q.G.K.VF.EA.RAVL.P.P.K..G..C.. | |
Retrocopy | QGQALAKQIHAVRYLECSALQQDGVKEVFAEAVRAVLNPTPIKR-GRSCVL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 18 .87 RPM | 22 .09 RPM |
SRP017611_kidney | 10 .57 RPM | 4 .92 RPM |
SRP017611_liver | 21 .59 RPM | 2 .31 RPM |
SRP040447_lung | 70 .82 RPM | 34 .63 RPM |
SRP040447_skeletal_muscle | 15 .46 RPM | 1 .95 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000017364 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000018194 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000006543 | 4 retrocopies | |
Cavia porcellus | ENSCPOG00000013861 | 1 retrocopy |
retro_cpor_18 ,
|
Echinops telfairi | ENSETEG00000012902 | 3 retrocopies | |
Macropus eugenii | ENSMEUG00000006196 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000012467 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000009949 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000008763 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000007272 | 4 retrocopies | |
Takifugu rubripes | ENSTRUG00000016201 | 1 retrocopy |