RetrogeneDB ID: | retro_meug_201 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | GeneScaffold_5781:31409..31974(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMEUG00000009921 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAC3 | ||
Ensembl ID: | ENSMEUG00000006196 | ||
Aliases: | None | ||
Description: | ras-related C3 botulinum toxin substrate 3 (rho family, small GTP binding protein Rac3) [Source:HGNC Symbol;Acc:9803] |
Percent Identity: | 69.47 % |
Parental protein coverage: | 98.44 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPL |
MQ.IKCVVVGDGAVGKTCLLI.YTTNAFP.EYIPTVFDNYSA...VDG..VNL.LWDTAGQE.YDRLR.L | |
Retrocopy | MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSTVDGRTVNLNLWDTAGQEEYDRLRTL |
Parental | SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIERLRDKKLAPITYP |
SYPQT.VF.ICFS..SP.S.ENVR.KWYPEV.HHCP..PI.LVGTK.DLR...D...RL.....APIT.. | |
Retrocopy | SYPQTNVFVICFSIASPPSYENVRHKWYPEVCHHCPDVPILLVGTKKDLRAQPDAVRRLKEQGQAPITPQ |
Parental | QGLAMAREIGSVKYLECSALTQRGLKTVFDE-AIRAVLCPPPIKKPGKKC |
QG.A....I..V.YLECSAL.Q.G.K.VF.E.A.RAVL.P.P.K..G..C | |
Retrocopy | QGVALSKQIHAVRYLECSALQQDGVKEVFAE>AVRAVLNPTPLKR-GRSC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000017364 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000018194 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000013861 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000012902 | 3 retrocopies | |
Felis catus | ENSFCAG00000011671 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000006196 | 1 retrocopy |
retro_meug_201 ,
|
Macropus eugenii | ENSMEUG00000012295 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000012467 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000009949 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000008763 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000007272 | 4 retrocopies | |
Takifugu rubripes | ENSTRUG00000016201 | 1 retrocopy |