RetrogeneDB ID: | retro_bole_33 | ||
Retrocopylocation | Organism: | Brassica oleracea | |
Coordinates: | C9:5039868..5040354(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | Bo9g017440 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | Bo5g004420 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 64.1 % |
Parental protein coverage: | 97.37 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | EPE--VAAAGVPKKRTFKKFAFKGVDLDALLDMSTDDLVKLFPSRIRRRFSRGLTRKPMALIKKLRKAKR |
EPE...A.A...K.RTFKKF.F.G....ALL.MST.DL.KLF..R.RRRF.RGL..KP..LIKKLRKAK. | |
Retrocopy | EPEFATAVAVATKNRTFKKFSFRGFNVEALLKMSTYDLSKLFNARVRRRFYRGLKKKPLILIKKLRKAKK |
Parental | EAPQG--EKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRP-- |
EA......KPE.V.THLRNMIIVPEMIGS..GV.NGK.FN.V.IKPEMIGHYLAEFS...K.V.H.RP.. | |
Retrocopy | EAKDENKKKPELVKTHLRNMIIVPEMIGSVVGVHNGKKFNEVVIKPEMIGHYLAEFSMTCKKVDHYRPRI |
Parental | -GVGATHSS-RFIPLK |
.G.G....S.RFIPL. | |
Retrocopy | CGCGCYRNSTRFIPLR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Arabidopsis thaliana | AT1G04270 | 1 retrocopy | |
Brassica oleracea | Bo5g004420 | 1 retrocopy |
retro_bole_33 ,
|
Arabidopsis lyrata | fgenesh2_kg.1__358__AT1G04270.1 | 1 retrocopy | |
Medicago truncatula | MTR_1g070450 | 1 retrocopy | |
Solanum tuberosum | PGSC0003DMG400007336 | 1 retrocopy | |
Solanum lycopersicum | Solyc02g082000.2 | 1 retrocopy | |
Triticum aestivum | Traes_2AL_52D3F9AF41 | 1 retrocopy |