RetrogeneDB ID: | retro_btau_235 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 18:2084727..2085246(-) | ||
Located in intron of: | ENSBTAG00000002303 | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000004526 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TPT1 | ||
Ensembl ID: | ENSBTAG00000010156 | ||
Aliases: | TPT1, TCTP | ||
Description: | Translationally-controlled tumor protein [Source:UniProtKB/Swiss-Prot;Acc:Q5E984] |
Percent Identity: | 97.67 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MIIYRDLISHDEMFSDIYKIREVADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGEGTESTVITGV |
MIIYRDLISHD.MFSDIYKIREVADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGP.GEGTESTVITGV | |
Retrocopy | MIIYRDLISHDKMFSDIYKIREVADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPDGEGTESTVITGV |
Parental | DIVMNHHLQETSFTKEAYKKYIKDYMKSIKGKLEEQRPERVKPFMTGAAEQIKHILANFKNYQFFIGENM |
DIVMNH.LQETSFTKEAYKKYIKDYMKSIKGKLEEQRPERVKPFMTGAAEQIKHILANFKNYQFFIGENM | |
Retrocopy | DIVMNHRLQETSFTKEAYKKYIKDYMKSIKGKLEEQRPERVKPFMTGAAEQIKHILANFKNYQFFIGENM |
Parental | NPDGMVALLDYREDGVTPYMIFFKDGLEMEKC |
NPDGMVALLDYREDGVTPYMIFFKDGLEME.C | |
Retrocopy | NPDGMVALLDYREDGVTPYMIFFKDGLEMETC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .58 RPM | 528 .97 RPM |
ERP005899_muscle | 1 .95 RPM | 3725 .91 RPM |
SRP017611_brain | 0 .18 RPM | 246 .35 RPM |
SRP017611_kidney | 0 .71 RPM | 885 .99 RPM |
SRP017611_liver | 0 .45 RPM | 686 .37 RPM |
SRP030211_testis | 0 .14 RPM | 202 .36 RPM |