RetrogeneDB ID: | retro_btau_777 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 19:3185954..3186398(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BT.52802 | ||
Ensembl ID: | ENSBTAG00000000205 | ||
Aliases: | None | ||
Description: | monocyte to macrophage differentiation protein [Source:RefSeq peptide;Acc:NP_001069069] |
Percent Identity: | 76.67 % |
Parental protein coverage: | 62.18 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | RFQICFYRFMNHRA-PANGRYKPTCYEHAANCYTHAFLIVPAIVGSALLHRLSDDCWEKITAWIYGMGLC |
RFQ..F..FMNH.A.PA.GRYKPT.Y.HAANCYTHAFLI.PAIVGS.LLH.LSDDCWEKIT.WIYGM.LC | |
Retrocopy | RFQNRFQQFMNHWA<PAKGRYKPTGYKHAANCYTHAFLIAPAIVGSTLLHQLSDDCWEKITTWIYGMDLC |
Parental | ALFIVSTVF-HIVAWKKSHLRTVEHWFHMCDRMVIYFFIAASYAPWLNLRELGPLASHMRWFIWLMAAGG |
A.FI.ST.F.H.V..K...LRTV.H.F.M..RMVIYFFIAASY.PW.NL..LG.LASHM.WFIWLMAAGG | |
Retrocopy | AFFIISTDF>HHVMEKVAPLRTVKHCFYMYYRMVIYFFIAASYTPWVNLHALGSLASHMHWFIWLMAAGG |
Parental | TIYVFLYHEK |
TIYVFLYHEK | |
Retrocopy | TIYVFLYHEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 3 .39 RPM |
ERP005899_muscle | 0 .00 RPM | 8 .92 RPM |
SRP017611_brain | 0 .00 RPM | 64 .77 RPM |
SRP017611_kidney | 0 .00 RPM | 11 .91 RPM |
SRP017611_liver | 0 .00 RPM | 2 .34 RPM |
SRP030211_testis | 0 .00 RPM | 29 .36 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000000205 | 1 retrocopy |
retro_btau_777 ,
|
Choloepus hoffmanni | ENSCHOG00000013437 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000017248 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000007054 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000012876 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000014847 | 5 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000010549 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000005902 | 2 retrocopies | |
Procavia capensis | ENSPCAG00000004969 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000016227 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000007915 | 1 retrocopy |