RetrogeneDB ID: | retro_dnov_2313 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_63084:2640..3036(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMD | ||
Ensembl ID: | ENSDNOG00000017248 | ||
Aliases: | None | ||
Description: | monocyte to macrophage differentiation-associated [Source:HGNC Symbol;Acc:7153] |
Percent Identity: | 94.7 % |
Parental protein coverage: | 56.9 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | FIAASYAPWLNLRELGPLASHMRWFIWLMAAGGTIYVFLYHEKYKVVELFFYLTMGFSPALVVTSMNNTD |
F.AASYAPWLNLRELGPLASHMRWFIWLMAAGGTIYVFLYHEKYKVVELFFYLTMGFS.ALVV.SMNNTD | |
Retrocopy | FVAASYAPWLNLRELGPLASHMRWFIWLMAAGGTIYVFLYHEKYKVVELFFYLTMGFSSALVVASMNNTD |
Parental | GLHELACGGLIYCLGVVFFKSDGIIPFAHAIWHLFVATAAAVHYYAIWKYLYRSPTDFMRHL |
GL.ELACGGL.YCLGVVFFKSDGIIPFAHAIWHLFVATAAAVHYY.IWKYLYRSPTDFM.HL | |
Retrocopy | GLQELACGGLFYCLGVVFFKSDGIIPFAHAIWHLFVATAAAVHYYTIWKYLYRSPTDFM*HL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 1 .56 RPM |
SRP012922_cerebellum | 0 .00 RPM | 9 .49 RPM |
SRP012922_heart | 0 .00 RPM | 1 .62 RPM |
SRP012922_kidney | 0 .00 RPM | 0 .00 RPM |
SRP012922_liver | 0 .00 RPM | 0 .00 RPM |
SRP012922_lung | 0 .00 RPM | 14 .36 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 0 .87 RPM |
SRP012922_spleen | 0 .00 RPM | 6 .52 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000000205 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000013437 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000017248 | 1 retrocopy |
retro_dnov_2313 ,
|
Macropus eugenii | ENSMEUG00000007054 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000012876 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000014847 | 5 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000010549 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000005902 | 2 retrocopies | |
Procavia capensis | ENSPCAG00000004969 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000016227 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000007915 | 1 retrocopy |