RetrogeneDB ID: | retro_chof_1814 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_3918:29659..29884(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMD | ||
Ensembl ID: | ENSCHOG00000013437 | ||
Aliases: | None | ||
Description: | monocyte to macrophage differentiation-associated [Source:HGNC Symbol;Acc:7153] |
Percent Identity: | 77.63 % |
Parental protein coverage: | 55.88 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | HMRDRIVIYHTPVASYAPWLNLRELGPLASHMRWFIWLMAAGGTIYVFLYHEKYKVVELFFYLTMGFSPA |
HM.DR.VIY....A.Y.PWLNL.ELGPLASHM.W..WLMAAG.TIY.FLYHEK.KVVELFFYL.MGFSPA | |
Retrocopy | HMYDRMVIYFFIAACYDPWLNLCELGPLASHMCWCNWLMAAGKTIYIFLYHEK*KVVELFFYL-MGFSPA |
Parental | LVVTSM |
LVVTS. | |
Retrocopy | LVVTSV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000000205 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000013437 | 1 retrocopy |
retro_chof_1814 ,
|
Dasypus novemcinctus | ENSDNOG00000017248 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000007054 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000012876 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000014847 | 5 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000010549 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000005902 | 2 retrocopies | |
Procavia capensis | ENSPCAG00000004969 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000016227 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000007915 | 1 retrocopy |