RetrogeneDB ID: retro_mluc_289

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430051:440351..441068(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000029438
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000012876
• Aliases: None
• Description: None

Sequence

>retro_mluc_289
ATGCAGTTCCAGAATCGATTCCAGCGGTTCATGAACCACCGGGCCCCAGCCAATGGCCGCTACAAACCAACTTGTTATGA
ACATGCTGCTAACTGTTACACACATGCATTCCTCATTGTCCCGGCCATCATGGGCAGCGTCCTCCTCCATCTGCTGTCTG
ACGACTACTGGGAGAAGATAACAGCATGGATTTATGGCATGTGCCTCTGTGCCCTCTTCATTGTCTCCACAGTATTTCAC
ATGATGTCATGGAAAAAGAGCCACCTAAGGACAGTGGAGCGATGTTTCCACATGTGTGATAGAATGGTTATCTATTTCTT
CATTGCTGCGTCTTATGCACCATGGTTAAATCTCCGTGAACTTGGACCACTGGCATCTCATATGCGTTGGTTTATCTGGC
TCATGGCAGCTGGAGGAACCGTTTATGTATTTCTCTACCATGAAAAGTATAAGGTGGTTGAGCTCCTTTTATATCTCACA
ATGGGCTTCTCTCCAGCCTTGGTGGTGACATCAATGAACAACACGGAGGGACTTCACGAGCTCGCCTGTGGAGGCCTGAG
TTACTGCCTGGGTGTGGTCTTCTTCAAGAGTGATGGCATCATCCCGTTCGCTCATGCCATCTGGCACCTGTTTGTGGCCA
CGGCAGTCGCCATGCATTACTACGCCATCTGGAAGTATCTTTACCAAAGCCCCACAGACTTTATGCACCATTTGTGA

Alignment

ORF - retro_mluc_289 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 91.14 %
• Parental protein coverage: 99.58 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  RYQLNFYRFMNHRAPANGRYKPTCYEHAANCYTHAFLIVPAIVGSTLLHRLSDDCWEKITAWIYGMGLCA
          ..Q..F.RFMNHRAPANGRYKPTCYEHAANCYTHAFLIVPAI.GS.LLH.LSDD.WEKITAWIYGM.LCA
Retrocopy QFQNRFQRFMNHRAPANGRYKPTCYEHAANCYTHAFLIVPAIMGSVLLHLLSDDYWEKITAWIYGMCLCA

Parental  LFIVSTVFHMVSWKKSHLRTVEQCFHMCDRMVIYFFIAASYAPWLNLRELGPLASHMRWFIWLMAAGGTI
          LFIVSTVFHM.SWKKSHLRTVE.CFHMCDRMVIYFFIAASYAPWLNLRELGPLASHMRWFIWLMAAGGT.
Retrocopy LFIVSTVFHMMSWKKSHLRTVERCFHMCDRMVIYFFIAASYAPWLNLRELGPLASHMRWFIWLMAAGGTV

Parental  YVFLYHEKYKLVELLCYLTMGFSPALVVTSMNNTEGLHELACGGLIYCLGVVFFKSDGIIPFAHAIWHLF
          YVFLYHEKYK.VELL.YLTMGFSPALVVTSMNNTEGLHELACGGL.YCLGVVFFKSDGIIPFAHAIWHLF
Retrocopy YVFLYHEKYKVVELLLYLTMGFSPALVVTSMNNTEGLHELACGGLSYCLGVVFFKSDGIIPFAHAIWHLF

Parental  VATAAAVHYYAIWKYLYRSPTDFVRHL
          VATA.A.HYYAIWKYLY.SPTDF..HL
Retrocopy VATAVAMHYYAIWKYLYQSPTDFMHHL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_289 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 11 parental genes, and 16 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000000205	1 retrocopy	retro_btau_777,
Choloepus hoffmanni	ENSCHOG00000013437	1 retrocopy	retro_chof_1814,
Dasypus novemcinctus	ENSDNOG00000017248	1 retrocopy	retro_dnov_2313,
Macropus eugenii	ENSMEUG00000007054	1 retrocopy	retro_meug_714,
Myotis lucifugus	ENSMLUG00000012876	1 retrocopy	retro_mluc_289 ,
Monodelphis domestica	ENSMODG00000014847	5 retrocopies	retro_mdom_1029, retro_mdom_1569, retro_mdom_1591, retro_mdom_670, retro_mdom_951,
Oryctolagus cuniculus	ENSOCUG00000010549	1 retrocopy	retro_ocun_222,
Otolemur garnettii	ENSOGAG00000005902	2 retrocopies	retro_ogar_3070, retro_ogar_3071,
Procavia capensis	ENSPCAG00000004969	1 retrocopy	retro_pcap_231,
Ictidomys tridecemlineatus	ENSSTOG00000016227	1 retrocopy	retro_itri_913,
Tursiops truncatus	ENSTTRG00000007915	1 retrocopy	retro_ttru_469,