RetrogeneDB ID: | retro_mdom_1591 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 6:64344661..64345092(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMD | ||
Ensembl ID: | ENSMODG00000014847 | ||
Aliases: | None | ||
Description: | monocyte to macrophage differentiation-associated [Source:HGNC Symbol;Acc:7153] |
Percent Identity: | 78.67 % |
Parental protein coverage: | 61.76 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | CYEHAANCYTHALLIVPAIVGSALLHRLSDDCWEKITAWIYGMGLCALFIVSTVFHIVSWKKSHLRTMEH |
CYEHAANCYTHALLIVPAI.GSAL.HRLSD.CWE.I.AWIYGMGL...FI.STVFHIVS.K.SH.RT.EH | |
Retrocopy | CYEHAANCYTHALLIVPAIMGSALPHRLSDECWEEIPAWIYGMGL---FIGSTVFHIVSRKRSHSRTKEH |
Parental | CFHMCDRMVIYFFIAASYAPWLNLRELGPLASH-MRWFIWLMAAGGTIYVFLYHEKYKVVELF-FYLTMG |
CFHM.DR..IYFFIA.S.A.WLNL.E.GPLASH.M.WFIWLMAAGG.IYVFLYHEKYKVVELF.F....G | |
Retrocopy | CFHMRDRRMIYFFIAVSSAQWLNLPEFGPLASH>MCWFIWLMAAGGNIYVFLYHEKYKVVELF<FV*QWG |
Parental | F-SPALVVTS |
F.SPALV..S | |
Retrocopy | F<SPALVFKS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
SRP007412_testis | 0 .00 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000000205 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000013437 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000017248 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000007054 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000012876 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000014847 | 5 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000010549 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000005902 | 2 retrocopies | |
Procavia capensis | ENSPCAG00000004969 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000016227 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000007915 | 1 retrocopy |