RetrogeneDB ID: | retro_cfam_42 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 23:2117634..2118183(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000004427 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SSU72 | ||
Ensembl ID: | ENSCAFG00000019254 | ||
Aliases: | None | ||
Description: | Canis lupus familiaris SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae) (SSU72), mRNA. [Source:RefSeq mRNA;Acc:NM_001252325] |
Percent Identity: | 96.09 % |
Parental protein coverage: | 65.98 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | DLLRKDKELYTQNGILHMLDRNKRIKPRPERFQNCRDLFDLILTCEERVYDQVVEDLNSREQETCQPVHV |
DLLR.DKELYTQNGILHMLD.NKRIKPRPERFQNCRDLFDLILTCEERVYDQVVEDLNSREQETCQPVHV | |
Retrocopy | DLLRTDKELYTQNGILHMLDKNKRIKPRPERFQNCRDLFDLILTCEERVYDQVVEDLNSREQETCQPVHV |
Parental | INVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSGRAFLHTVCFY |
INVDIQDNHEEATLGAFLIC.LCQCIQHTEDMENEIDELLQEFEEKSGRAFLH.V.FY | |
Retrocopy | INVDIQDNHEEATLGAFLICGLCQCIQHTEDMENEIDELLQEFEEKSGRAFLHSVGFY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .04 RPM | 40 .82 RPM |
SRP017611_brain | 0 .16 RPM | 39 .70 RPM |
SRP017611_kidney | 0 .26 RPM | 60 .36 RPM |
SRP017611_liver | 0 .22 RPM | 17 .11 RPM |