RetrogeneDB ID: | retro_sscr_1179 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | X:133769870..133770452(+) | ||
Located in intron of: | ENSSSCG00000031070 | ||
Retrocopyinformation | Ensembl ID: | ENSSSCG00000012720 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SSU72 | ||
Ensembl ID: | ENSSSCG00000003348 | ||
Aliases: | None | ||
Description: | SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:25016] |
Percent Identity: | 92.31 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MPSSPLRVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFRTTYDQMYNDLLR |
M.S.PLRVAVVCSSNQNRSMEAH.ILSKRGFSVRSFGTG.HVKLPGPAPDKPNVYDFRTTYDQMYNDLL. | |
Retrocopy | MQSLPLRVAVVCSSNQNRSMEAHSILSKRGFSVRSFGTGAHVKLPGPAPDKPNVYDFRTTYDQMYNDLLM |
Parental | KDKELHYTQNGILHMLDRNKRIKPRPERFQNCKDLFDLILTCEERVYDQVVEDLNSREQETCQPVHVINV |
KDK.L.YTQNGILHMLDRNKRIKPRPERFQNCKD.FDLI.TCEERVYD.VVEDLNSREQETCQPVHVINV | |
Retrocopy | KDKDL-YTQNGILHMLDRNKRIKPRPERFQNCKDPFDLIITCEERVYDLVVEDLNSREQETCQPVHVINV |
Parental | DIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSGRAFLHTVCFY |
DIQDNHEEATLGAFLICELCQCIQHTED..NEI.ELLQEFEEKSG..FLHTVCFY | |
Retrocopy | DIQDNHEEATLGAFLICELCQCIQHTEDVDNEIEELLQEFEEKSGQTFLHTVCFY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 116 .54 RPM |
SRP014902_testis | 0 .28 RPM | 56 .58 RPM |
SRP018288_heart | 0 .00 RPM | 20 .33 RPM |
SRP018288_kidney | 0 .00 RPM | 53 .98 RPM |
SRP018288_liver | 0 .00 RPM | 40 .14 RPM |
SRP018288_lung | 0 .00 RPM | 49 .08 RPM |
SRP018856_adipose | 0 .00 RPM | 66 .46 RPM |
SRP035408_brain | 0 .06 RPM | 87 .34 RPM |
SRP035408_liver | 0 .00 RPM | 61 .65 RPM |