RetrogeneDB ID: | retro_mmus_1317 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 14:123985499..123985816(-) | ||
Located in intron of: | ENSMUSG00000025551 | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000082738 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ssu72 | ||
Ensembl ID: | ENSMUSG00000029038 | ||
Aliases: | Ssu72, 1190002E22Rik, 1500011L16Rik, 2610101M12Rik | ||
Description: | Ssu72 RNA polymerase II CTD phosphatase homolog (yeast) [Source:MGI Symbol;Acc:MGI:1916241] |
Percent Identity: | 78.7 % |
Parental protein coverage: | 58.24 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | VVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLP-GPAPDKPNVYDFKTTYDQ-MYNDLLRKDKELYT |
VVCSS.Q..SM.AH.ILS...FSV.SFGTGT....P.GPA.DK.NVYDFKT.YDQ.MYNDLLRKDKELYT | |
Retrocopy | VVCSSKQIQSMKAHVILSNCHFSVCSFGTGT-IDVP>GPATDKSNVYDFKTIYDQ>MYNDLLRKDKELYT |
Parental | QNGILHMLDRNKRIKPRPERFQNCTDLFDLILTCEERV |
QNGILHMLDRNKRIKP.PERFQN.TDLFDLI.TCEE.. | |
Retrocopy | QNGILHMLDRNKRIKPHPERFQNFTDLFDLIFTCEENL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .19 RPM | 26 .82 RPM |
SRP007412_cerebellum | 0 .22 RPM | 25 .10 RPM |
SRP007412_heart | 0 .03 RPM | 16 .47 RPM |
SRP007412_kidney | 0 .02 RPM | 23 .27 RPM |
SRP007412_liver | 0 .00 RPM | 17 .48 RPM |
SRP007412_testis | 0 .05 RPM | 9 .83 RPM |
Species | RetrogeneDB ID |
---|---|
Rattus norvegicus | retro_rnor_1169 |