Parental gene:

SSU72, ENSPPYG00000002000

Aliases:None
Description:SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:25016]
Organism:Orangutan (Pongo abelii)
Coordinates:1:229011030..229045219(+)


>ENSPPYG00000002000
ATGCCGTCGTCCCCGCTGCGGGTGGCAGTGGTGTGCTCGAGCAACCAGAACCGGAGCATGGAGGCGCACAACATCCTCAG
CAAACGGGGATTCAGTGTCCGATCCTTTGGAACAGGGACTCACGTGAAGCTTCCAGGACCAGCTCCCGACAAGCCCAATG
TTTATGATTTCAAAACCACATATGACCAGATGTACAATGATCTTCTTAGGAAAGACAAAGAACTCTATACACAGAATGGG
ATTTTACATATGCTGGACAGAAATAAGAGAATCAAGCCCCGGCCAGAACAGAACTGCAAAGACCTGTTTGATCTGATCCT
CACTTGCGAAGAGAGAGTGTATGACCAGGTGGTGGATCTGAATTCCAGAGAACAGGAGACCTGCCAGCCCGTGCACGTGG
TTAATGTAGACATCCAGGACAACCACGAGGAGGCCACCCTGGGGGCGTTTCTCATCTGTGAGCTCTGCCAGTGTATCCAG
CACACGGAAGACATGGAGAACGAGATTGACGAGCTGCTGCAGGAGTTCGAGGAGAAGAGTGGCCGCACCTTTCTGCACAC
CGTCTGCTTCTACTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 121 .09 RPM
SRP007412_cerebellum 76 .61 RPM
SRP007412_heart 30 .04 RPM
SRP007412_kidney 73 .35 RPM
SRP007412_liver 65 .85 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000013736 possible_ortholog 3 retrogenes
Canis familiaris ENSCAFG00000019254 ortholog_one2one 2 retrogenes
Callithrix jacchus ENSCJAG00000010957 ortholog_one2one 3 retrogenes
Cavia porcellus ENSCPOG00000002238 ortholog_one2one 2 retrogenes
Dipodomys ordii ENSDORG00000011714 possible_ortholog 1 retrogene
Homo sapiens ENSG00000160075 ortholog_one2one 8 retrogenes
Gorilla gorilla ENSGGOG00000004421 ortholog_one2one 1 retrogene
Loxodonta africana ENSLAFG00000002076 ortholog_one2one 4 retrogenes
Macropus eugenii ENSMEUG00000015170 ortholog_one2one 1 retrogene
Myotis lucifugus ENSMLUG00000016517 ortholog_one2one 2 retrogenes
Macaca mulatta ENSMMUG00000001551 ortholog_one2one 1 retrogene
Monodelphis domestica ENSMODG00000006616 ortholog_one2one 3 retrogenes
Mustela putorius furo ENSMPUG00000014394 possible_ortholog 2 retrogenes
Mus musculus ENSMUSG00000029038 ortholog_one2one 1 retrogene
Otolemur garnettii ENSOGAG00000024430 ortholog_one2one 2 retrogenes
Pan troglodytes ENSPTRG00000000034 ortholog_one2one 16 retrogenes
Pteropus vampyrus ENSPVAG00000017695 ortholog_one2one 4 retrogenes
Rattus norvegicus ENSRNOG00000017829 ortholog_one2one 2 retrogenes
Sus scrofa ENSSSCG00000003348 ortholog_one2one 2 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000002960 ortholog_one2one 4 retrogenes
Tursiops truncatus ENSTTRG00000017051 ortholog_one2one 2 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_53 79.90 100.00
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Download FASTA sequences of all ENSPPYG00000002000 retrocopies