RetrogeneDB ID: | retro_rnor_2766 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | X:4207748..4208331(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ssu72 | ||
Ensembl ID: | ENSRNOG00000017829 | ||
Aliases: | Ssu72, RGD1307854 | ||
Description: | RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Source:UniProtKB/Swiss-Prot;Acc:Q4KLK9] |
Percent Identity: | 64.62 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MPSSPLRVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYNDLLR |
M.S.PL.VAVVCSSNQN.SM.AH.ILSK.GF.V.SF.TG..VKLPGP.PD.PNVY.F..TYD..Y.DLL. | |
Retrocopy | MQSHPLQVAVVCSSNQNQSMGAHRILSK*GFNVKSFRTGSFVKLPGPKPDMPNVYAFQNTYDKIYRDLLK |
Parental | KDKELYTQNGILHMLDRNKRIKPRPERFQNCKDLFDLILTCEERVYDQVVEDLNSREQETCQPVHVVNVD |
KD...YTQ.GILHMLDRN.RIK..PERFQ..K.LF..I.TC...VY.QVVE.LN..E.E.CQ.VHV..V. | |
Retrocopy | KDRAFYTQKGILHMLDRNWRIKSCPERFQSSKYLFNVIFTCNTYVYNQVVEYLNAQELEVCQLVHVIKVN |
Parental | IQDNHEEAT-LGAFLICELCQCIQHTEDMENEIDELLQEFEEKSGRAFLHTVCFY |
I..N..EAT.LG.FLICELC..IQ..EDM...I.ELL..FE...G..FLHTVCF. | |
Retrocopy | ITENYKEAT>LGSFLICELCFSIQYIEDMDDKISELLHMFEVTTGKTFLHTVCFH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 49 .54 RPM |
SRP017611_kidney | 0 .00 RPM | 39 .15 RPM |
SRP017611_liver | 0 .00 RPM | 24 .81 RPM |