Parental gene:

SSU72, ENSSSCG00000003348

Aliases:None
Description:SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:25016]
Organism:Pig (Sus scrofa)
Coordinates:6:58158455..58185123(-)


>ENSSSCG00000003348
ATGCCGTCGTCGCCGTTGCGGGTGGCGGTGGTGTGCTCGAGCAACCAGAACCGGAGCATGGAGGCGCACAACATCCTCAG
CAAACGAGGGTTCAGCGTACGGTCCTTCGGGACAGGGACTCACGTGAAGCTCCCGGGACCAGCGCCCGACAAGCCGAACG
TCTACGATTTCAGAACCACGTACGACCAGATGTACAACGACCTCCTCAGGAAGGACAAAGAACTGCACTACACGCAGAAT
GGCATTTTGCACATGTTGGACAGAAACAAGAGAATCAAGCCCCGGCCAGAAAGGTTCCAGAACTGCAAAGACCTGTTTGA
CCTGATCCTTACCTGTGAAGAGCGGGTGTACGACCAGGTGGTGGAAGATCTGAATTCCAGGGAGCAGGAGACCTGCCAGC
CCGTGCACGTGATCAACGTGGACATCCAGGACAACCACGAGGAGGCCACGCTGGGGGCCTTCCTCATCTGTGAGCTCTGC
CAGTGCATTCAGCACACGGAGGACATGGAGAACGAGATCGACGAGCTGCTGCAGGAGTTCGAGGAGAAGAGCGGCCGGGC
CTTCCTCCACACAGTCTGCTTCTACTGA

Library Parental gene expression (RPM)
SRP014902_placenta 116 .54 RPM
SRP014902_testis 56 .58 RPM
SRP018856_adipose 66 .46 RPM
SRP018288_kidney 53 .98 RPM
SRP018288_lung 49 .08 RPM
SRP018288_liver 40 .14 RPM
SRP018288_heart 20 .33 RPM
SRP035408_liver 61 .65 RPM
SRP035408_brain 87 .34 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000013736 possible_ortholog 3 retrogenes
retro_amel_1930, retro_amel_292, retro_amel_84,
Canis familiaris ENSCAFG00000019254 ortholog_one2one 2 retrogenes
retro_cfam_185, retro_cfam_42,
Callithrix jacchus ENSCJAG00000010957 ortholog_one2one 3 retrogenes
retro_cjac_1640, retro_cjac_2335, retro_cjac_37,
Cavia porcellus ENSCPOG00000002238 ortholog_one2one 2 retrogenes
retro_cpor_83, retro_cpor_909,
Dipodomys ordii ENSDORG00000011714 possible_ortholog 1 retrogene
retro_dord_433,
Homo sapiens ENSG00000160075 ortholog_one2one 8 retrogenes
retro_hsap_3778, retro_hsap_4741, retro_hsap_747, retro_hsap_748, retro_hsap_749, retro_hsap_841, retro_hsap_842, retro_hsap_843,
Gorilla gorilla ENSGGOG00000004421 ortholog_one2one 1 retrogene
retro_ggor_206,
Loxodonta africana ENSLAFG00000002076 ortholog_one2one 4 retrogenes
retro_lafr_1153, retro_lafr_1154, retro_lafr_1155, retro_lafr_400,
Macropus eugenii ENSMEUG00000015170 ortholog_one2one 1 retrogene
retro_meug_1253,
Myotis lucifugus ENSMLUG00000016517 ortholog_one2one 2 retrogenes
retro_mluc_292, retro_mluc_371,
Macaca mulatta ENSMMUG00000001551 ortholog_one2one 1 retrogene
retro_mmul_159,
Monodelphis domestica ENSMODG00000006616 ortholog_one2one 3 retrogenes
retro_mdom_16, retro_mdom_1997, retro_mdom_487,
Mustela putorius furo ENSMPUG00000014394 possible_ortholog 2 retrogenes
retro_mputfur_108, retro_mputfur_1408,
Mus musculus ENSMUSG00000029038 ortholog_one2one 1 retrogene
retro_mmus_1317,
Otolemur garnettii ENSOGAG00000024430 ortholog_one2many 2 retrogenes
retro_ogar_124, retro_ogar_13,
Pongo abelii ENSPPYG00000002000 ortholog_one2one 1 retrogene
retro_pabe_53,
Pan troglodytes ENSPTRG00000000034 ortholog_one2one 16 retrogenes
retro_ptro_2560, retro_ptro_2963, retro_ptro_3016, retro_ptro_3017, retro_ptro_3018, retro_ptro_3019, retro_ptro_3020, retro_ptro_3021, retro_ptro_3022, retro_ptro_3023, retro_ptro_3024, retro_ptro_3025, retro_ptro_3026, retro_ptro_3156, retro_ptro_531, retro_ptro_532,
Pteropus vampyrus ENSPVAG00000017695 ortholog_one2one 4 retrogenes
retro_pvam_11, retro_pvam_1151, retro_pvam_272, retro_pvam_767,
Rattus norvegicus ENSRNOG00000017829 ortholog_one2one 2 retrogenes
retro_rnor_1169, retro_rnor_2766,
Ictidomys tridecemlineatus ENSSTOG00000002960 ortholog_one2one 4 retrogenes
retro_itri_1055, retro_itri_1352, retro_itri_1496, retro_itri_99,
Tursiops truncatus ENSTTRG00000017051 ortholog_one2one 2 retrogenes
retro_ttru_1264, retro_ttru_1265,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_38 66.33 100.00
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2. retro_sscr_1179 92.31 100.00
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Download FASTA sequences of all ENSSSCG00000003348 retrocopies