Parental gene: | SSU72, ENSG00000160075 |
| Aliases: | SSU72, HSPC182, PNAS-120 |
| Description: | SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:25016] |
| Organism: | Human (Homo sapiens) |
| Coordinates: | 1:1477052..1510249(-) |
>ENSG00000160075
ATGCCGTCGTCCCCGCTGCGGGTGGCGGTGGTGTGCTCGAGCAACCAGAACCGGAGCATGGAGGCGCACAACATCCTCAG
CAAACGGGGATTCAGCGTCCGATCCTTTGGAACAGGGACTCACGTGAAGCTTCCAGGACCAGCTCCCGACAAGCCCAATG
TTTATGATTTCAAAACCACATATGACCAGATGTACAATGATCTTCTTAGGAAAGACAAAGAACTCTATACACAGAATGGG
ATTTTACATATGCTGGACAGAAATAAGAGAATCAAGCCCCGGCCAGAAAGATTCCAGAACTGCAAAGACCTGTTTGATCT
GATCCTCACTTGCGAAGAGAGAGTGTATGACCAGGTGGTGGAAGATCTGAATTCCAGAGAACAGGAGACCTGCCAGCCTG
TGCACGTGGTCAATGTGGACATCCAGGACAACCACGAGGAGGCCACCCTGGGGGCGTTTCTCATCTGTGAGCTCTGCCAG
TGTATCCAGCACACGGAAGACATGGAGAACGAGATCGACGAGCTGCTGCAGGAGTTCGAGGAGAAGAGTGGCCGCACCTT
TCTGCACACCGTCTGCTTCTACTGA
ATGCCGTCGTCCCCGCTGCGGGTGGCGGTGGTGTGCTCGAGCAACCAGAACCGGAGCATGGAGGCGCACAACATCCTCAG
CAAACGGGGATTCAGCGTCCGATCCTTTGGAACAGGGACTCACGTGAAGCTTCCAGGACCAGCTCCCGACAAGCCCAATG
TTTATGATTTCAAAACCACATATGACCAGATGTACAATGATCTTCTTAGGAAAGACAAAGAACTCTATACACAGAATGGG
ATTTTACATATGCTGGACAGAAATAAGAGAATCAAGCCCCGGCCAGAAAGATTCCAGAACTGCAAAGACCTGTTTGATCT
GATCCTCACTTGCGAAGAGAGAGTGTATGACCAGGTGGTGGAAGATCTGAATTCCAGAGAACAGGAGACCTGCCAGCCTG
TGCACGTGGTCAATGTGGACATCCAGGACAACCACGAGGAGGCCACCCTGGGGGCGTTTCTCATCTGTGAGCTCTGCCAG
TGTATCCAGCACACGGAAGACATGGAGAACGAGATCGACGAGCTGCTGCAGGAGTTCGAGGAGAAGAGTGGCCGCACCTT
TCTGCACACCGTCTGCTTCTACTGA
| Library | Parental gene expression (RPM) |
|---|---|
| bodymap2_liver | 42 .33 RPM |
| bodymap2_lung | 55 .63 RPM |
| bodymap2_breast | 79 .01 RPM |
| bodymap2_adipose | 63 .69 RPM |
| bodymap2_adrenal | 88 .24 RPM |
| bodymap2_skeletal_muscle | 107 .38 RPM |
| bodymap2_thyroid | 118 .51 RPM |
| bodymap2_prostate | 73 .70 RPM |
| bodymap2_colon | 63 .27 RPM |
| bodymap2_testis | 67 .93 RPM |
| bodymap2_brain | 68 .40 RPM |
| bodymap2_heart | 52 .26 RPM |
| bodymap2_white_blood_cells | 89 .23 RPM |
| bodymap2_lymph_node | 91 .51 RPM |
| bodymap2_ovary | 93 .07 RPM |
| bodymap2_kidney | 73 .08 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000013736 | possible_ortholog | 3 retrogenes | |
| Canis familiaris | ENSCAFG00000019254 | ortholog_one2one | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000010957 | ortholog_one2one | 3 retrogenes | |
| Cavia porcellus | ENSCPOG00000002238 | ortholog_one2one | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000004421 | ortholog_one2one | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000002076 | ortholog_one2one | 4 retrogenes | |
| Macropus eugenii | ENSMEUG00000015170 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000016517 | ortholog_one2one | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000001551 | ortholog_one2one | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000006616 | ortholog_one2one | 3 retrogenes | |
| Mustela putorius furo | ENSMPUG00000014394 | possible_ortholog | 2 retrogenes | |
| Mus musculus | ENSMUSG00000029038 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000024430 | ortholog_one2one | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000002000 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000000034 | ortholog_one2one | 16 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000017695 | ortholog_one2one | 4 retrogenes | |
| Rattus norvegicus | ENSRNOG00000017829 | ortholog_one2one | 2 retrogenes | |
| Sus scrofa | ENSSSCG00000003348 | ortholog_one2one | 2 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000002960 | ortholog_one2one | 4 retrogenes | |
| Tursiops truncatus | ENSTTRG00000017051 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_hsap_747 | 70.62 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_hsap_748 | 70.77 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_hsap_749 | 71.65 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_hsap_841 | 71.13 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_hsap_842 | 71.13 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_hsap_843 | 70.62 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_hsap_3778 | 70.10 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_hsap_4741 | 78.35 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSG00000160075 retrocopies