RetrogeneDB ID: | retro_chof_1496 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_30844:2790..3335(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL4 | ||
Ensembl ID: | ENSCHOG00000003008 | ||
Aliases: | None | ||
Description: | ribosomal protein L4 [Source:HGNC Symbol;Acc:10353] |
Percent Identity: | 73.22 % |
Parental protein coverage: | 50.28 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | INILVLAPGGYVYSLRIFTELSFRKFNKLHVSRSKAASLSSCHHLPMHKMMNTDLSRILKSPEIQRALRA |
.NIL.LAPGG.V....I.TE..F.K...L.....K.ASL.S.H.LPMHK.MNTDLSRILKSPEIQRA..A | |
Retrocopy | LNILKLAPGGHVGRFCIWTESAFHKLDDLYGIWCKPASLKSNHNLPMHKIMNTDLSRILKSPEIQRAC*A |
Parental | PRKKIHRRVLKKNPLKN-RIMLKLNPYAKTMRRNTILRQARNHKLRMDKAAAALEAKSDEKGVPGKKPVV |
P.KKI..R.LKKNPLKN.RIMLKL.PYAKTM..NTIL.Q.RNHKLRMDK..A.LEAKSDEKGVPG.KPVV | |
Retrocopy | PCKKIQCRILKKNPLKNLRIMLKLKPYAKTMHQNTILQQPRNHKLRMDKGVATLEAKSDEKGVPGNKPVV |
Parental | -GKKGKKATGVKKPQKQKLSVGKKVADTKKPAEKKPTTEEKKP |
.GKKGKKA.GVKKP.KQK..V.KKVA.T.KPAEKKPT.EEKKP | |
Retrocopy | <GKKGKKAVGVKKPKKQKPLVRKKVAATNKPAEKKPTIEEKKP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |