Parental gene: | RPL4, ENSPVAG00000000068 |
| Aliases: | None |
| Description: | ribosomal protein L4 [Source:HGNC Symbol;Acc:10353] |
| Organism: | Megabat (Pteropus vampyrus) |
| Coordinates: | GeneScaffold_2922:82940..87559(-) |
>ENSPVAG00000000068
ATGNNNNNNNNNNNNNNNNNNNTATCGGTGTACTCCGATGGGGAATCATCTGGCAAAAATGTCACTTCCTCGGCTGTGTT
CAAGGCTCCCATTCGACCAGATATTGTGAACTTTGTTCACACCAACTTGCGCAAAAACAATAGGCAGCCCTATGCTGTCA
GTGAATTAGCAGGTCATCAAACCAGTGCTGAGTCGTGGGGTACTGGCAGAGCTGTGGCTCGAATTCCCAGAGTTCGAGGC
GGTGGGACTCATCGTTCCGGCCAGGGTGCTTTTGGCAATATGTGTCGTGGAGGCCGCATGTTTGCACCAACGAAAACCTG
GCGCCGTTGGCACCGCAGAGTGAACACAACACAGAAGCGATATGCCATCTGCTCTGCTCTGGCTGCCTCAGCCTTACCAG
CACTGGTTATGTCTAAAGGTCATCGAATTGAGGAAGTTCCTGAACTTCCTTTGGTGGTTGAAGATAAAGTTGAAGGCTAC
AAGAAGACCAAGGAGGCTGTTTTGCTTCTTAAGAAACTTAAGGCCTGGAATGATATAAAAAAGGTGTATGCCTCTCAACG
AATGAGAGCTGGCAAGGGCAAAATGAGAAACCGTCGTCGTATCCAGCGCAGGGGACCTTGCATAATCTATAATGAGGACA
ATGGCATCATCAAAGCTTTCAGAAATATCCCTGGAATCACTCTGCTTAATGTAAGCAAACTGAACATTTTGAAACTTGCT
CCTGGTGGGCATGTGGGCCGTTTCTGCATTTGGACTGAAAGTGCTTTCCGCAAATTAGATGATCTGTATGGCACTTGGCG
TAAAGCTGCCTCTCTCAAGAGTAACTACAACCTTCCCATGCACAAGATGCTCAATACAGACCTTAGCAGAATCTTGAAAA
GCCCAGAGATCCAGAGAGCCCTCCGAGCACCACGCAAGAAGATTCATCGCAGAGTCCTAAAGAAGAATCCACTGAAAAAC
TTGAGAATCATGTTGAAGCTAAACCCATATGCAAAGACCATGCGCCGGAACACCATCCTTCGCCAGGCCAAGAATCACAA
GCTCCGGGTAGATAAAGCAGCAGCAGCGCTAGAAGCCAAATCAGATGAAAAGAAGGGGGTCCCAGGCAAGAAGCCCGTGG
CAGGGAAGAAAGGAAAGAAGGCTGTTGGTGTTGTGAAGCAGAAGAAGCCTTTGGTGGGAAAAAAGGCTGCAGCTACCAAG
AAACCCGCAGCTGAGAAGAAGCCTGTGGAAAAGAAACCCACCACAGAAGAAAAGAAGCCTGTAGCATAA
ATGNNNNNNNNNNNNNNNNNNNTATCGGTGTACTCCGATGGGGAATCATCTGGCAAAAATGTCACTTCCTCGGCTGTGTT
CAAGGCTCCCATTCGACCAGATATTGTGAACTTTGTTCACACCAACTTGCGCAAAAACAATAGGCAGCCCTATGCTGTCA
GTGAATTAGCAGGTCATCAAACCAGTGCTGAGTCGTGGGGTACTGGCAGAGCTGTGGCTCGAATTCCCAGAGTTCGAGGC
GGTGGGACTCATCGTTCCGGCCAGGGTGCTTTTGGCAATATGTGTCGTGGAGGCCGCATGTTTGCACCAACGAAAACCTG
GCGCCGTTGGCACCGCAGAGTGAACACAACACAGAAGCGATATGCCATCTGCTCTGCTCTGGCTGCCTCAGCCTTACCAG
CACTGGTTATGTCTAAAGGTCATCGAATTGAGGAAGTTCCTGAACTTCCTTTGGTGGTTGAAGATAAAGTTGAAGGCTAC
AAGAAGACCAAGGAGGCTGTTTTGCTTCTTAAGAAACTTAAGGCCTGGAATGATATAAAAAAGGTGTATGCCTCTCAACG
AATGAGAGCTGGCAAGGGCAAAATGAGAAACCGTCGTCGTATCCAGCGCAGGGGACCTTGCATAATCTATAATGAGGACA
ATGGCATCATCAAAGCTTTCAGAAATATCCCTGGAATCACTCTGCTTAATGTAAGCAAACTGAACATTTTGAAACTTGCT
CCTGGTGGGCATGTGGGCCGTTTCTGCATTTGGACTGAAAGTGCTTTCCGCAAATTAGATGATCTGTATGGCACTTGGCG
TAAAGCTGCCTCTCTCAAGAGTAACTACAACCTTCCCATGCACAAGATGCTCAATACAGACCTTAGCAGAATCTTGAAAA
GCCCAGAGATCCAGAGAGCCCTCCGAGCACCACGCAAGAAGATTCATCGCAGAGTCCTAAAGAAGAATCCACTGAAAAAC
TTGAGAATCATGTTGAAGCTAAACCCATATGCAAAGACCATGCGCCGGAACACCATCCTTCGCCAGGCCAAGAATCACAA
GCTCCGGGTAGATAAAGCAGCAGCAGCGCTAGAAGCCAAATCAGATGAAAAGAAGGGGGTCCCAGGCAAGAAGCCCGTGG
CAGGGAAGAAAGGAAAGAAGGCTGTTGGTGTTGTGAAGCAGAAGAAGCCTTTGGTGGGAAAAAAGGCTGCAGCTACCAAG
AAACCCGCAGCTGAGAAGAAGCCTGTGGAAAAGAAACCCACCACAGAAGAAAAGAAGCCTGTAGCATAA
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000005211 | ortholog_one2many | 2 retrogenes | |
| Canis familiaris | ENSCAFG00000017309 | ortholog_one2many | 1 retrogene | |
| Choloepus hoffmanni | ENSCHOG00000003008 | ortholog_one2one | 6 retrogenes | |
| Callithrix jacchus | ENSCJAG00000007491 | ortholog_one2many | 2 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000006693 | ortholog_one2one | 3 retrogenes | |
| Equus caballus | ENSECAG00000023179 | ortholog_one2one | 1 retrogene | |
| Echinops telfairi | ENSETEG00000000337 | ortholog_one2many | 3 retrogenes | |
| Felis catus | ENSFCAG00000012293 | ortholog_one2many | 4 retrogenes | |
| Homo sapiens | ENSG00000174444 | ortholog_one2one | 5 retrogenes | |
| Gorilla gorilla | ENSGGOG00000003695 | ortholog_one2many | 4 retrogenes | |
| Loxodonta africana | ENSLAFG00000006494 | ortholog_one2one | 3 retrogenes | |
| Microcebus murinus | ENSMICG00000004419 | ortholog_one2one | 6 retrogenes | |
| Myotis lucifugus | ENSMLUG00000011809 | ortholog_one2many | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000016844 | ortholog_one2many | 2 retrogenes | |
| Monodelphis domestica | ENSMODG00000009657 | ortholog_one2one | 2 retrogenes | |
| Mustela putorius furo | ENSMPUG00000000337 | ortholog_one2many | 3 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000012938 | ortholog_one2one | 4 retrogenes | |
| Pongo abelii | ENSPPYG00000006578 | ortholog_one2many | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000007195 | ortholog_one2one | 6 retrogenes | |
| Rattus norvegicus | ENSRNOG00000009378 | possible_ortholog | 5 retrogenes | |
| Sus scrofa | ENSSSCG00000004945 | ortholog_one2one | 2 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000009221 | ortholog_one2one | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000014392 | ortholog_one2one | 9 retrogenes | |
| Tarsius syrichta | ENSTSYG00000005588 | ortholog_one2one | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000010206 | ortholog_one2one | 7 retrogenes | |
| Vicugna pacos | ENSVPAG00000006746 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pvam_201 | 79.67 | 98.10 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pvam_202 | 81.07 | 90.76 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_pvam_216 | 75.52 | 55.92 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_pvam_236 | 83.03 | 65.40 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_pvam_267 | 77.10 | 60.66 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_pvam_399 | 76.04 | 50.71 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_pvam_428 | 71.60 | 76.07 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_pvam_430 | 70.11 | 83.41 | Please wait, loading | Please wait, loading | Please wait, loading |
| 9. | retro_pvam_435 | 76.85 | 72.75 | Please wait, loading | Please wait, loading | Please wait, loading |
| 10. | retro_pvam_466 | 79.86 | 68.01 | Please wait, loading | Please wait, loading | Please wait, loading |
| 11. | retro_pvam_518 | 80.71 | 59.95 | Please wait, loading | Please wait, loading | Please wait, loading |
| 12. | retro_pvam_736 | 75.24 | 97.63 | Please wait, loading | Please wait, loading | Please wait, loading |
| 13. | retro_pvam_778 | 58.86 | 70.14 | Please wait, loading | Please wait, loading | Please wait, loading |
| 14. | retro_pvam_819 | 69.25 | 84.36 | Please wait, loading | Please wait, loading | Please wait, loading |
| 15. | retro_pvam_865 | 76.45 | 60.90 | Please wait, loading | Please wait, loading | Please wait, loading |
| 16. | retro_pvam_955 | 74.34 | 53.32 | Please wait, loading | Please wait, loading | Please wait, loading |
| 17. | retro_pvam_1222 | 58.05 | 55.69 | Please wait, loading | Please wait, loading | Please wait, loading |
| 18. | retro_pvam_1342 | 76.92 | 51.90 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPVAG00000000068 retrocopies