RetrogeneDB ID: | retro_chof_1811 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_391521:343..1098(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ENO1 | ||
Ensembl ID: | ENSCHOG00000003483 | ||
Aliases: | None | ||
Description: | enolase 1, (alpha) [Source:HGNC Symbol;Acc:3350] |
Percent Identity: | 63.98 % |
Parental protein coverage: | 58.2 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 6 |
Parental | MSILKIFAREIFDSRGNPTVEVDLFTQKGLFRAAVPSGASAGIYEALELRDNDKTRYMGKGVS-KAVEHI |
.SILKI.....FD..GNPT.EV..FT.K.LF....PS.........LE..DND...YMGKG.S....EHI | |
Retrocopy | ISILKIIDT*VFDICGNPTIEVGFFTPKVLFIVTMPSCEGLAL*-GLEFWDNDQM*YMGKGIS<RGIEHI |
Parental | NKTIAPA-LVSKKLNVVEQEKIDKLMIEMDGTENK-KFGANAILGVSL-AVCKAGAVEKGVP-LYRHIAD |
NKTIA...LVSKKLN....EK.DKLMIEMDG.ENK.KFGA....GV.L......G...KG.P.LY.HIAD | |
Retrocopy | NKTIAVS<LVSKKLNIMGEEKNDKLMIEMDGAENKSKFGADTTVGVFLPCFIQGGVIQKGAP<LYCHIAD |
Parental | LAGNSEVILPVPAFNVINGGSHAGNKLAMQEFMILPVGAANFREAMRIGAEVYHNLKNVIKEKY-GKDAT |
LAG...VILPVPAFNVINGGSH.GNKL.MQE.MILPV..A.FREAM.I.AEVYHNLKNVIK.KY.GK.AT | |
Retrocopy | LAGKLGVILPVPAFNVINGGSHTGNKLDMQECMILPVSTA*FREAMSIRAEVYHNLKNVIKMKY>GKYAT |
Parental | -NVGDEGGFAPNILENKEALELIKNAVGKAGYSDK-VVIGMDV-AASEFFK |
...GD.G.F..NILENKE.LELIK.AVGK..Y.D..VVIGMDV..ASEFF. | |
Retrocopy | RRGGDKGRFSLNILENKETLELIKCAVGKC-YRDR<VVIGMDV<PASEFFR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000003483 | 2 retrocopies |
retro_chof_1289, retro_chof_1811 ,
|
Callithrix jacchus | ENSCJAG00000000359 | 4 retrocopies | |
Erinaceus europaeus | ENSEEUG00000008602 | 2 retrocopies | |
Homo sapiens | ENSG00000074800 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000005942 | 11 retrocopies | |
Macropus eugenii | ENSMEUG00000007840 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000009521 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000006382 | 2 retrocopies | |
Mus musculus | ENSMUSG00000063524 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000010086 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000004001 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000009492 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000000109 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000005030 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000017895 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000005522 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000002509 | 1 retrocopy |