RetrogeneDB ID: | retro_ocun_933 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 17:16792572..16793222(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ENO1 | ||
Ensembl ID: | ENSOCUG00000010086 | ||
Aliases: | None | ||
Description: | enolase 1, (alpha) [Source:HGNC Symbol;Acc:3350] |
Percent Identity: | 76.36 % |
Parental protein coverage: | 50.46 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MSVLKVHAREIFDSRGNPTVEVDLYTSKGLFRAAVPSGASTGIYEALELRDNDKTRYMGK-GVSKAVEHI |
MS.LK..AR..FD.RGNPTV.VDLYTSKGL..AAVPSGAS.GI..ALEL.DNDK....G..GVS.AVEHI | |
Retrocopy | MSILKICARKMFDARGNPTVQVDLYTSKGLSGAAVPSGASAGIDGALELGDNDKLCHVGR<GVSMAVEHI |
Parental | NKTIAPALVSKKLNVVEQEKIDKLMIEMDGTENKSKFGANAILGVSLAVCKAGAVEKGVPLYRHIADLAG |
N.TIAP.LV.K..NV.EQ.KIDKLM.EMDGTENK.K..ANAILGVSL.VCKAGAVEKGVPLY.HIAD.AG | |
Retrocopy | NETIAPVLVGK--NVLEQRKIDKLMVEMDGTENKYKLDANAILGVSLDVCKAGAVEKGVPLYHHIADVAG |
Parental | NSEVILPVPAFNVINGGSHAGNKLAMQEFMILPIGAASFREAMRIGAEVYHNLKNVIKEKYGKDATNVGD |
NSEVILPVP.F.VIN.GS...N.L..QEFMILPI.AA.F.E.M.IGAE.YHNLKNVIKE.YGKDAT.VGD | |
Retrocopy | NSEVILPVPTFSVINSGSRTSN*LSTQEFMILPIRAANFWEVMHIGAEAYHNLKNVIKENYGKDATSVGD |
Parental | EGGFAPNILE |
EG.FAPNILE | |
Retrocopy | EGEFAPNILE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 532 .79 RPM |
SRP017611_kidney | 0 .00 RPM | 449 .52 RPM |
SRP017611_liver | 0 .00 RPM | 335 .04 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000003483 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000000359 | 4 retrocopies | |
Erinaceus europaeus | ENSEEUG00000008602 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000005942 | 11 retrocopies | |
Macropus eugenii | ENSMEUG00000007840 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000009521 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000006382 | 2 retrocopies | |
Mus musculus | ENSMUSG00000063524 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000010086 | 1 retrocopy |
retro_ocun_933 ,
|
Rattus norvegicus | ENSRNOG00000017895 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000005522 | 1 retrocopy |