RetrogeneDB ID: | retro_mdom_1794 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 7:135700815..135702126(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSMODG00000009521 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 79.78 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | QNLKMSILKLHAREIFDSRGN-PT---VEVDLCTSKGLFRAAVPSGASTGVHEALELRDNDKTRYMGKGV |
QNLKMSIL..HAREIF.S.GN.PT.......L.TSK.LF..A.PSGASTGVHEALEL.DN.KT.YMGK.. | |
Retrocopy | QNLKMSILNTHAREIFNSWGN<PTPTPININLYTSKALFQVALPSGASTGVHEALELQDNAKTHYMGKVI |
Parental | SKAVEHINKTIAPCLVSKKLNVVEQEKIDKLMLEMDGTDNKSKFGANAILGVSLAVCKAGAAEKCVSLYR |
SKA.EHINK.IAPCL.SKKLNVVEQEKIDKLMLEMD.T.....FGA.AILGV.LAVCKAGAAEKCVSLYR | |
Retrocopy | SKAIEHINKSIAPCLISKKLNVVEQEKIDKLMLEMDAT---T*FGAKAILGVPLAVCKAGAAEKCVSLYR |
Parental | HIADLAGNEEVVLPVPAFNVINGGSHAGNKLAMQEFMILPVGAANFKEAMRI-GAEVYHNLKNVIKQKYG |
HIADL.GNEEVVLPVP.FNVIN.G.HAGNKLAMQ.FMILPVGAA.FKEAM.I.G.E.YHNLKNVIKQKYG | |
Retrocopy | HIADLVGNEEVVLPVPVFNVINSGPHAGNKLAMQSFMILPVGAASFKEAMSI>GTEIYHNLKNVIKQKYG |
Parental | QDATNVGDEGGFAPNILENKEALELLTTAISKAGYTDKV-VIGMDVAASEFYRSGKYDLDFKSPDDPSRH |
QDATN.GDEG.FAPNILEN.EAL.LL.TAISK..Y.DKV..IGMD.A.SEFYRSGKYDLDFKS.D..SRH | |
Retrocopy | QDATNEGDEGDFAPNILEN*EALQLLKTAISKVDYSDKV<LIGMDAATSEFYRSGKYDLDFKSLDYSSRH |
Parental | ISSEA-LGDLYKGFIKDYPVVSIEDPFDQDDWEAWTNFTATAGIQVVGDDLTVTNPKRIEKAVDVKACNC |
ISS.A.LG..YKGFIKDYP.VSIED.F.Q.DWEAWT.FTA.AGIQVV.DDLTV.NPK.I.KA.D.KACNC | |
Retrocopy | ISSKA>LGT-YKGFIKDYPAVSIEDTFGQNDWEAWTKFTAAAGIQVVEDDLTVANPKFIKKAMDIKACNC |
Parental | LLLKVNQIGTVTESLQACKLAQSNGWGVMVSHRSGETEDTFIADLVVGLCTGQIKTGAPCRSERLAKYNQ |
LLLKVNQIGT.TESLQACKL.QSNGWG.MVSH.SGETEDTFI.DLV..LCTGQ.K.G.PC.SE.LAKYNQ | |
Retrocopy | LLLKVNQIGTMTESLQACKLVQSNGWGLMVSHHSGETEDTFIVDLVLDLCTGQNKIGVPCQSELLAKYNQ |
Parental | ILRIEEELGGKAKFAGRNFRNPKAQ |
ILRI.EELG..AKFAGRNFR.PKAQ | |
Retrocopy | ILRIMEELGSEAKFAGRNFRYPKAQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
SRP007412_testis | 0 .00 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000003483 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000000359 | 4 retrocopies | |
Erinaceus europaeus | ENSEEUG00000008602 | 2 retrocopies | |
Homo sapiens | ENSG00000074800 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000005942 | 11 retrocopies | |
Macropus eugenii | ENSMEUG00000007840 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000009521 | 1 retrocopy |
retro_mdom_1794 ,
|
Mustela putorius furo | ENSMPUG00000006382 | 2 retrocopies | |
Mus musculus | ENSMUSG00000063524 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000010086 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000004001 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000009492 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000000109 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000005030 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000017895 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000005522 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000002509 | 1 retrocopy |