RetrogeneDB ID: | retro_rnor_112 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 3:65883767..65885072(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000028543 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Eno1 | ||
Ensembl ID: | ENSRNOG00000017895 | ||
Aliases: | Eno1, Nne | ||
Description: | Alpha-enolase [Source:UniProtKB/Swiss-Prot;Acc:P04764] |
Percent Identity: | 99.77 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSILKIHAREIFDSRGNPTVEVDLYTAKGLFRAAVPSGASTGIYEALELRDNDKTRFMGKGVSKAVEHIN |
MSILKIHAREIFDSRGNPTVEVDLYTAKGLFRAAVPSGASTGIYEALELRDNDKTRFMGKGVSKAVEHIN | |
Retrocopy | MSILKIHAREIFDSRGNPTVEVDLYTAKGLFRAAVPSGASTGIYEALELRDNDKTRFMGKGVSKAVEHIN |
Parental | KTIAPALVSKKLNVVEQEKIDQLMIEMDGTENKSKFGANAILGVSLAVCKAGAVEKGVPLYRHIADLAGN |
KTIAPALVSKKLNVVEQEKIDQLMIEMDGTENKSKFGANAILGVSLAVCKAGAVEKGVPLYRHIADLAGN | |
Retrocopy | KTIAPALVSKKLNVVEQEKIDQLMIEMDGTENKSKFGANAILGVSLAVCKAGAVEKGVPLYRHIADLAGN |
Parental | PEVILPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFREAMRIGAEVYHNLKNVIKEKYGKDATNVGDE |
PEVILPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFREAMRIGAEVYHNLKNVIKEKYGKDATNVGDE | |
Retrocopy | PEVILPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFREAMRIGAEVYHNLKNVIKEKYGKDATNVGDE |
Parental | GGFAPNILENKEALELLKSAIAKAGYTDQVVIGMDVAASEFYRAGKYDLDFKSPDDASRYITPDQLADLY |
GGFAPNILENKEALELLKSAIAKAGYTDQVVIGMDVAASEFYRAGKYDLDFKSPDDASRYITPDQLADLY | |
Retrocopy | GGFAPNILENKEALELLKSAIAKAGYTDQVVIGMDVAASEFYRAGKYDLDFKSPDDASRYITPDQLADLY |
Parental | KSFIKDYPVVSIEDPFDQDDWDAWQKFTATAGIQVVGDDLTVTNPKRIAKAAGEKSCNCLLLKVNQIGSV |
KSFIKDYPVVSIEDPFDQDDWDAWQKFTATAGIQVVGDDLTVTNPKRIAKAAGEKSCNCLLLKVNQIGSV | |
Retrocopy | KSFIKDYPVVSIEDPFDQDDWDAWQKFTATAGIQVVGDDLTVTNPKRIAKAAGEKSCNCLLLKVNQIGSV |
Parental | TESLQACKLAQSNGWGVMVSHRSGETEDTFIADLVVGLCTGQIKTGAPCRSERLAKYNQILRIEEELGSK |
TESLQACKLAQSNGWGVMVSHRSGETEDTFIADLVVGLCTGQIKTGAPCRSE.LAKYNQILRIEEELGSK | |
Retrocopy | TESLQACKLAQSNGWGVMVSHRSGETEDTFIADLVVGLCTGQIKTGAPCRSECLAKYNQILRIEEELGSK |
Parental | AKFAGRSFRNPLAK |
AKFAGRSFRNPLAK | |
Retrocopy | AKFAGRSFRNPLAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .29 RPM | 329 .43 RPM |
SRP017611_kidney | 0 .84 RPM | 662 .23 RPM |
SRP017611_liver | 0 .00 RPM | 127 .01 RPM |
EST ID | Start | End | Identity | Match | Mis-match | Score |
---|---|---|---|---|---|---|
FM062233 | 65883734 | 65884305 | 99.5 | 567 | 2 | 563 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000003483 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000000359 | 4 retrocopies | |
Erinaceus europaeus | ENSEEUG00000008602 | 2 retrocopies | |
Homo sapiens | ENSG00000074800 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000005942 | 11 retrocopies | |
Macropus eugenii | ENSMEUG00000007840 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000009521 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000006382 | 2 retrocopies | |
Mus musculus | ENSMUSG00000063524 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000010086 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000004001 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000009492 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000000109 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000005030 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000004078 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000017895 | 1 retrocopy |
retro_rnor_112 ,
|
Sarcophilus harrisii | ENSSHAG00000005522 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000002509 | 1 retrocopy |