Parental gene:

ENO1, ENSCJAG00000000359

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:7:43334110..43351112(-)


>ENSCJAG00000000359
ATGTCTATTCTCAAGATCCATGCCAGGGAGATCTTTGACTCTCGTGGGAATCCCACCGTCGAGGTTGATCTCTTCACCGC
AAAAGGTCTCTTCAGAGCTGCTGTGCCTAGTGGTGCTTCAACTGGTATCTATGAGGCCCTAGAGCTCCGGGACAATGATA
AGACTCGCTATATGGGGAAGGGTGTCTCAAAGGCTGTTGAGCACATCAATAAAACTATTGCGCCTGCCCTGGTTAGCAAG
AAACTGAATGTCACAGAACAAGAGAAGATTGACAAATTGATGATCGAGATGGATGGAACAGAAAATAAATCTAAGTTTGG
TGCAAATGCCATTCTGGGGGTATCCCTCGCTGTCTGCAAAGCCGGTGCTGTTGAGAAGGGGGTCCCTCTGTACCACCACA
TCGCCGACTTGGCTGGCAACTCCGAAGTCATCCTACCAGTGCCGGCATTCAACGTCATCAATGGCGGTTCCCATGCTGGT
AACAAGCTGGCCATGCAGGAGTTCATGATCCTCCCAGTGGGTGCCGCAAACTTCAGGGAAGCCATGCGCATCGGAGCGGA
GGTTTACCACAACCTGAAGAACGTCATCAAGGAGAAATACGGGAAAGATGCCACCAATGTGGGCGATGAAGGCGGGTTTG
CTCCCAACATCCTAGAGAATAAAGAAGGTCTGGAGCTGCTGAAGACTGCAATTGGGAAAGCTGGCTACACCGATAAGGTG
GTCATCGGCATGGATGTGGCAGCCTCCGAGTTCTACAGGTCTGGGAAGTATGACCTGGACTTCAAGTCTCCTGATGATCC
CAGCAGGTACATCTCACCTGACCAGCTGGCCGACCTGTACAAGTCCTTCATCAAGGACTACCCAGTGGTGTCTATCGAAG
ATCCCTTTGACCAGGATGACTGGGGAGCATGGCAGAAGTTCACAGCCAGTGCAGGAATCCAGGTGGTGGGGGATGATCTC
ACAGTGACCAACCCGAAAAGGATTGCCAAGGCTGCAAATGAGAAGTCCTGCAACTGCCTGCTGCTCAAAGTGAACCAGAT
CGGCTCCGTGACCGAGTCCCTGCAGGCGTGCAAGTTGGCCCAGGCCAATGGTTGGGGCGTCATGGTGTCTCATCGTTCTG
GGGAGACTGAAGATACCTTCATCGCCGACCTGGTGGTGGGGCTGTGCACTGGGCAGATCAAGACTGGTGCCCCTTGCCGA
TCTGAGCGCTTGGCCAAGTACAACCAGCTCCTCAGAATTGAAGAGGAGCTGGGCAGCAAGGCCAAGTTTGCTGGCAGGAA
CTTCAGAAACCCCCTGGCCAAGTAA

Library Parental gene expression (RPM)
SRP051959_colon 148 .77 RPM
SRP051959_heart 85 .02 RPM
SRP051959_kidney 148 .18 RPM
SRP051959_liver 188 .84 RPM
SRP051959_lung 50 .46 RPM
SRP051959_lymph_node 86 .37 RPM
SRP051959_skeletal_muscle 45 .75 RPM
SRP051959_spleen 67 .79 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000003483 ortholog_one2many 2 retrogenes
retro_chof_1289, retro_chof_1811,
Callithrix jacchus ENSCJAG00000011679 within_species_paralog 2 retrogenes
retro_cjac_115, retro_cjac_177,
Erinaceus europaeus ENSEEUG00000008602 possible_ortholog 2 retrogenes
retro_eeur_23, retro_eeur_243,
Homo sapiens ENSG00000074800 ortholog_one2many 1 retrogene
retro_hsap_325,
Macropus eugenii ENSMEUG00000005942 possible_ortholog 11 retrogenes
retro_meug_1445, retro_meug_1521, retro_meug_353, retro_meug_472, retro_meug_494, retro_meug_652, retro_meug_664, retro_meug_765, retro_meug_794, retro_meug_874, retro_meug_888,
Macropus eugenii ENSMEUG00000007840 possible_ortholog 1 retrogene
retro_meug_96,
Monodelphis domestica ENSMODG00000009521 possible_ortholog 1 retrogene
retro_mdom_1794,
Mustela putorius furo ENSMPUG00000006382 possible_ortholog 2 retrogenes
retro_mputfur_1162, retro_mputfur_547,
Mus musculus ENSMUSG00000063524 ortholog_many2many 1 retrogene
retro_mmus_109,
Oryctolagus cuniculus ENSOCUG00000010086 possible_ortholog 1 retrogene
retro_ocun_933,
Otolemur garnettii ENSOGAG00000004001 possible_ortholog 1 retrogene
retro_ogar_1059,
Ochotona princeps ENSOPRG00000009492 ortholog_one2many 1 retrogene
retro_opri_969,
Pan troglodytes ENSPTRG00000000109 ortholog_one2many 1 retrogene
retro_ptro_261,
Pteropus vampyrus ENSPVAG00000005030 possible_ortholog 1 retrogene
retro_pvam_317,
Rattus norvegicus ENSRNOG00000017895 ortholog_many2many 1 retrogene
retro_rnor_112,
Sarcophilus harrisii ENSSHAG00000005522 possible_ortholog 1 retrogene
retro_shar_304,
Tarsius syrichta ENSTSYG00000002509 possible_ortholog 1 retrogene
retro_tsyr_2011,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_438 78.70 53.00
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2. retro_cjac_1963 94.98 100.00
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3. retro_cjac_2238 97.74 61.06
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4. retro_cjac_3891 79.65 53.00
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Download FASTA sequences of all ENSCJAG00000000359 retrocopies