Parental gene: | ENO1, ENSCJAG00000000359 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 7:43334110..43351112(-) |
>ENSCJAG00000000359
ATGTCTATTCTCAAGATCCATGCCAGGGAGATCTTTGACTCTCGTGGGAATCCCACCGTCGAGGTTGATCTCTTCACCGC
AAAAGGTCTCTTCAGAGCTGCTGTGCCTAGTGGTGCTTCAACTGGTATCTATGAGGCCCTAGAGCTCCGGGACAATGATA
AGACTCGCTATATGGGGAAGGGTGTCTCAAAGGCTGTTGAGCACATCAATAAAACTATTGCGCCTGCCCTGGTTAGCAAG
AAACTGAATGTCACAGAACAAGAGAAGATTGACAAATTGATGATCGAGATGGATGGAACAGAAAATAAATCTAAGTTTGG
TGCAAATGCCATTCTGGGGGTATCCCTCGCTGTCTGCAAAGCCGGTGCTGTTGAGAAGGGGGTCCCTCTGTACCACCACA
TCGCCGACTTGGCTGGCAACTCCGAAGTCATCCTACCAGTGCCGGCATTCAACGTCATCAATGGCGGTTCCCATGCTGGT
AACAAGCTGGCCATGCAGGAGTTCATGATCCTCCCAGTGGGTGCCGCAAACTTCAGGGAAGCCATGCGCATCGGAGCGGA
GGTTTACCACAACCTGAAGAACGTCATCAAGGAGAAATACGGGAAAGATGCCACCAATGTGGGCGATGAAGGCGGGTTTG
CTCCCAACATCCTAGAGAATAAAGAAGGTCTGGAGCTGCTGAAGACTGCAATTGGGAAAGCTGGCTACACCGATAAGGTG
GTCATCGGCATGGATGTGGCAGCCTCCGAGTTCTACAGGTCTGGGAAGTATGACCTGGACTTCAAGTCTCCTGATGATCC
CAGCAGGTACATCTCACCTGACCAGCTGGCCGACCTGTACAAGTCCTTCATCAAGGACTACCCAGTGGTGTCTATCGAAG
ATCCCTTTGACCAGGATGACTGGGGAGCATGGCAGAAGTTCACAGCCAGTGCAGGAATCCAGGTGGTGGGGGATGATCTC
ACAGTGACCAACCCGAAAAGGATTGCCAAGGCTGCAAATGAGAAGTCCTGCAACTGCCTGCTGCTCAAAGTGAACCAGAT
CGGCTCCGTGACCGAGTCCCTGCAGGCGTGCAAGTTGGCCCAGGCCAATGGTTGGGGCGTCATGGTGTCTCATCGTTCTG
GGGAGACTGAAGATACCTTCATCGCCGACCTGGTGGTGGGGCTGTGCACTGGGCAGATCAAGACTGGTGCCCCTTGCCGA
TCTGAGCGCTTGGCCAAGTACAACCAGCTCCTCAGAATTGAAGAGGAGCTGGGCAGCAAGGCCAAGTTTGCTGGCAGGAA
CTTCAGAAACCCCCTGGCCAAGTAA
ATGTCTATTCTCAAGATCCATGCCAGGGAGATCTTTGACTCTCGTGGGAATCCCACCGTCGAGGTTGATCTCTTCACCGC
AAAAGGTCTCTTCAGAGCTGCTGTGCCTAGTGGTGCTTCAACTGGTATCTATGAGGCCCTAGAGCTCCGGGACAATGATA
AGACTCGCTATATGGGGAAGGGTGTCTCAAAGGCTGTTGAGCACATCAATAAAACTATTGCGCCTGCCCTGGTTAGCAAG
AAACTGAATGTCACAGAACAAGAGAAGATTGACAAATTGATGATCGAGATGGATGGAACAGAAAATAAATCTAAGTTTGG
TGCAAATGCCATTCTGGGGGTATCCCTCGCTGTCTGCAAAGCCGGTGCTGTTGAGAAGGGGGTCCCTCTGTACCACCACA
TCGCCGACTTGGCTGGCAACTCCGAAGTCATCCTACCAGTGCCGGCATTCAACGTCATCAATGGCGGTTCCCATGCTGGT
AACAAGCTGGCCATGCAGGAGTTCATGATCCTCCCAGTGGGTGCCGCAAACTTCAGGGAAGCCATGCGCATCGGAGCGGA
GGTTTACCACAACCTGAAGAACGTCATCAAGGAGAAATACGGGAAAGATGCCACCAATGTGGGCGATGAAGGCGGGTTTG
CTCCCAACATCCTAGAGAATAAAGAAGGTCTGGAGCTGCTGAAGACTGCAATTGGGAAAGCTGGCTACACCGATAAGGTG
GTCATCGGCATGGATGTGGCAGCCTCCGAGTTCTACAGGTCTGGGAAGTATGACCTGGACTTCAAGTCTCCTGATGATCC
CAGCAGGTACATCTCACCTGACCAGCTGGCCGACCTGTACAAGTCCTTCATCAAGGACTACCCAGTGGTGTCTATCGAAG
ATCCCTTTGACCAGGATGACTGGGGAGCATGGCAGAAGTTCACAGCCAGTGCAGGAATCCAGGTGGTGGGGGATGATCTC
ACAGTGACCAACCCGAAAAGGATTGCCAAGGCTGCAAATGAGAAGTCCTGCAACTGCCTGCTGCTCAAAGTGAACCAGAT
CGGCTCCGTGACCGAGTCCCTGCAGGCGTGCAAGTTGGCCCAGGCCAATGGTTGGGGCGTCATGGTGTCTCATCGTTCTG
GGGAGACTGAAGATACCTTCATCGCCGACCTGGTGGTGGGGCTGTGCACTGGGCAGATCAAGACTGGTGCCCCTTGCCGA
TCTGAGCGCTTGGCCAAGTACAACCAGCTCCTCAGAATTGAAGAGGAGCTGGGCAGCAAGGCCAAGTTTGCTGGCAGGAA
CTTCAGAAACCCCCTGGCCAAGTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 67 .79 RPM |
| SRP051959_skeletal_muscle | 45 .75 RPM |
| SRP051959_lymph_node | 86 .37 RPM |
| SRP051959_lung | 50 .46 RPM |
| SRP051959_liver | 188 .84 RPM |
| SRP051959_kidney | 148 .18 RPM |
| SRP051959_heart | 85 .02 RPM |
| SRP051959_colon | 148 .77 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000003483 | ortholog_one2many | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000011679 | within_species_paralog | 2 retrogenes | |
| Erinaceus europaeus | ENSEEUG00000008602 | possible_ortholog | 2 retrogenes | |
| Homo sapiens | ENSG00000074800 | ortholog_one2many | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000005942 | possible_ortholog | 11 retrogenes | |
| Macropus eugenii | ENSMEUG00000007840 | possible_ortholog | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000009521 | possible_ortholog | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000006382 | possible_ortholog | 2 retrogenes | |
| Mus musculus | ENSMUSG00000063524 | ortholog_many2many | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000010086 | possible_ortholog | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000004001 | possible_ortholog | 1 retrogene | |
| Ochotona princeps | ENSOPRG00000009492 | ortholog_one2many | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000000109 | ortholog_one2many | 1 retrogene | |
| Pteropus vampyrus | ENSPVAG00000005030 | possible_ortholog | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000017895 | ortholog_many2many | 1 retrogene | |
| Sarcophilus harrisii | ENSSHAG00000005522 | possible_ortholog | 1 retrogene | |
| Tarsius syrichta | ENSTSYG00000002509 | possible_ortholog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_438 | 78.70 | 53.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_1963 | 94.98 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_2238 | 97.74 | 61.06 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cjac_3891 | 79.65 | 53.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000000359 retrocopies