RetrogeneDB ID: | retro_cpor_1544 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_96:1925351..1925697(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCPOG00000010289 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL22L1 | ||
Ensembl ID: | ENSCPOG00000009215 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 85.34 % |
Parental protein coverage: | 96.64 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | KPKRSTWKFNLDLTHPVEDGIFDSG-NFEQFLREKVKVNGKTGNLGNVVHIERFKNKITVVSEKQFSKRY |
KP.RSTWK.NL.LTHPV.DGIFDS..NFE.FL.EKVKVNGKTGNL.NVVH.E.FK.KITVVSEKQFSKRY | |
Retrocopy | KPERSTWKLNLGLTHPVKDGIFDSP>NFEHFLKEKVKVNGKTGNLDNVVHTEHFKKKITVVSEKQFSKRY |
Parental | LKYLTKKYLKKNNLRDWLRVVASDKETYELRYFQISQDEDGSESED |
LKYLTKKYLKKNNLRD.L.VVASDKET.EL..FQISQDEDGSESED | |
Retrocopy | LKYLTKKYLKKNNLRDRLQVVASDKETDELQNFQISQDEDGSESED |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 21 .17 RPM |
SRP017611_kidney | 0 .00 RPM | 32 .56 RPM |
SRP017611_liver | 0 .00 RPM | 31 .47 RPM |
SRP040447_lung | 0 .00 RPM | 23 .68 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 43 .12 RPM |