RetrogeneDB ID: | retro_sscr_1039 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 9:121473092..121473457(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSSCG00000015460 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL22L1 | ||
Ensembl ID: | ENSSSCG00000027441 | ||
Aliases: | None | ||
Description: | ribosomal protein L22-like 1 [Source:HGNC Symbol;Acc:27610] |
Percent Identity: | 95.12 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MAPKKDKKPKKSTWKFNLDLTHPVEDGIFDARNFEQFLRE-KVKVNGKTGNLGNVVHIEHFKNKIMVVSE |
MAPKKDKKPKKSTWKFNLDLTHPV.DGIFDARNFE.FLRE.KVKVNGKTGNLGNVVHIEHFKNKIMVVSE | |
Retrocopy | MAPKKDKKPKKSTWKFNLDLTHPVGDGIFDARNFE*FLRE<KVKVNGKTGNLGNVVHIEHFKNKIMVVSE |
Parental | KQFSKRYLKYLTKKYLKKNNLRDWLRVVASDKETYELRYFQISQDEDGSESED |
KQFSKRYLKYLTKKYLKKNNL.DW.RVVASDKETYE.RYFQISQDEDGSESED | |
Retrocopy | KQFSKRYLKYLTKKYLKKNNLHDWHRVVASDKETYEFRYFQISQDEDGSESED |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 3 .45 RPM |
SRP014902_testis | 0 .14 RPM | 41 .73 RPM |
SRP018288_heart | 0 .00 RPM | 12 .65 RPM |
SRP018288_kidney | 0 .00 RPM | 16 .25 RPM |
SRP018288_liver | 0 .00 RPM | 17 .91 RPM |
SRP018288_lung | 0 .00 RPM | 5 .70 RPM |
SRP018856_adipose | 0 .00 RPM | 12 .94 RPM |
SRP035408_brain | 0 .03 RPM | 17 .09 RPM |
SRP035408_liver | 0 .00 RPM | 34 .29 RPM |