Parental gene:

RPL22, ENSCPOG00000020139

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_25:26356831..26364981(+)


>ENSCPOG00000020139
ATGGCTCCTGTGAAAAAGCTTGCAGCGAAAGGGGGCAAAAAAAAGAAGCAGGTCCTGAAGTTCACCCTTGACTGCACACA
TCCCGTAGAAGATGGAATCATGGATGCTGCCAATTTCGAGCAGTTTCTCCAGGAGAGAATCAAGGTGAACGGCAAAGCCG
GGAATCTCGGTGGAGGGGTGGTCACCATCGAAAGGAGCAAGAGCAAGATCACCGTGACTTCCGAGGTGCCTTTTTCCAAA
AGGTATTTGAAATATCTCACCAAAAAATACCTGAAGAAGAATAACCTGCGTGACTGGTTGCGCGTAGTGGCTAACAGCAA
AGAGAGTTACGAATTACGTTACTTCCAGATTAACCAGGACGAAGAGGAGGAGGAGGATGAGGATTAA

Library Parental gene expression (RPM)
SRP017611_brain 34 .80 RPM
SRP017611_kidney 57 .68 RPM
SRP017611_liver 48 .31 RPM
SRP040447_lung 65 .52 RPM
SRP040447_skeletal_muscle 49 .24 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009864 possible_ortholog 7 retrogenes
retro_amel_1219, retro_amel_1247, retro_amel_1775, retro_amel_1793, retro_amel_369, retro_amel_830, retro_amel_870,
Bos taurus ENSBTAG00000014423 possible_ortholog 4 retrogenes
retro_btau_1491, retro_btau_566, retro_btau_694, retro_btau_892,
Cavia porcellus ENSCPOG00000009215 within_species_paralog 1 retrogene
retro_cpor_1544,
Gorilla gorilla ENSGGOG00000027739 ortholog_one2many 10 retrogenes
retro_ggor_1111, retro_ggor_1652, retro_ggor_1655, retro_ggor_1708, retro_ggor_1757, retro_ggor_2268, retro_ggor_2567, retro_ggor_37, retro_ggor_531, retro_ggor_613,
Macaca mulatta ENSMMUG00000018347 ortholog_one2many 12 retrogenes
retro_mmul_1004, retro_mmul_1044, retro_mmul_1047, retro_mmul_1512, retro_mmul_2209, retro_mmul_2264, retro_mmul_2467, retro_mmul_2601, retro_mmul_271, retro_mmul_445, retro_mmul_469, retro_mmul_80,
Mustela putorius furo ENSMPUG00000007087 possible_ortholog 6 retrogenes
retro_mputfur_1074, retro_mputfur_1277, retro_mputfur_134, retro_mputfur_1433, retro_mputfur_578, retro_mputfur_873,
Pongo abelii ENSPPYG00000001951 possible_ortholog 11 retrogenes
retro_pabe_1196, retro_pabe_1213, retro_pabe_1435, retro_pabe_166, retro_pabe_248, retro_pabe_3114, retro_pabe_349, retro_pabe_3782, retro_pabe_3817, retro_pabe_590, retro_pabe_966,
Sus scrofa ENSSSCG00000003367 possible_ortholog 4 retrogenes
retro_sscr_257, retro_sscr_276, retro_sscr_497, retro_sscr_509,
Ictidomys tridecemlineatus ENSSTOG00000002832 ortholog_one2one 4 retrogenes
retro_itri_1250, retro_itri_1326, retro_itri_1543, retro_itri_407,
Tarsius syrichta ENSTSYG00000003649 ortholog_one2one 32 retrogenes
retro_tsyr_1043, retro_tsyr_1086, retro_tsyr_1140, retro_tsyr_1163, retro_tsyr_1197, retro_tsyr_1259, retro_tsyr_1304, retro_tsyr_1338, retro_tsyr_1350, retro_tsyr_1524, retro_tsyr_1587, retro_tsyr_1788, retro_tsyr_1966, retro_tsyr_1978, retro_tsyr_200, retro_tsyr_2075, retro_tsyr_2101, retro_tsyr_2114, retro_tsyr_219, retro_tsyr_242, retro_tsyr_337, retro_tsyr_377, retro_tsyr_392, retro_tsyr_504, retro_tsyr_688, retro_tsyr_788, retro_tsyr_828, retro_tsyr_881, retro_tsyr_969, retro_tsyr_972, retro_tsyr_973, retro_tsyr_983,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_825 57.94 82.81
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2. retro_cpor_837 72.84 63.28
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Download FASTA sequences of all ENSCPOG00000020139 retrocopies