RetrogeneDB ID: | retro_sscr_141 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 1:267845865..267846105(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL22L1 | ||
Ensembl ID: | ENSSSCG00000027441 | ||
Aliases: | None | ||
Description: | ribosomal protein L22-like 1 [Source:HGNC Symbol;Acc:27610] |
Percent Identity: | 72.62 % |
Parental protein coverage: | 66.39 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | KKSTWKFNLDLTHPVEDG-IFDARNFEQFLREKVKVNGKTGNLGNVVHIEH-FKNKIMVVSEKQFSKRY- |
.KSTW.FNLDLTH...DG.IFD...FEQF.REKVK.NGKTGNLGN.VH.E...KNKIM.VS.K.FSK.Y. | |
Retrocopy | RKSTWRFNLDLTHLANDG<IFDSGYFEQFIREKVKMNGKTGNLGNAVHMEF<LKNKIMIVSKK*FSKKY< |
Parental | LKYLTKKYLKKNNL |
LKYLTKKYLKK.N. | |
Retrocopy | LKYLTKKYLKKGNI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 3 .45 RPM |
SRP014902_testis | 0 .00 RPM | 41 .73 RPM |
SRP018288_heart | 0 .00 RPM | 12 .65 RPM |
SRP018288_kidney | 0 .00 RPM | 16 .25 RPM |
SRP018288_liver | 0 .00 RPM | 17 .91 RPM |
SRP018288_lung | 0 .00 RPM | 5 .70 RPM |
SRP018856_adipose | 0 .00 RPM | 12 .94 RPM |
SRP035408_brain | 0 .00 RPM | 17 .09 RPM |
SRP035408_liver | 0 .00 RPM | 34 .29 RPM |