RetrogeneDB ID: | retro_cpor_837 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_3:67878063..67878306(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL22 | ||
Ensembl ID: | ENSCPOG00000020139 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 72.84 % |
Parental protein coverage: | 63.28 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | KQVLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEVPFSKRYLKY |
K...KFT.DCTH.VEDGIMDA.NF.QF.QERIKVN....NL...VVTI.RSKSKI.V.S.V.FSKRYLKY | |
Retrocopy | KHLFKFTPDCTHHVEDGIMDAVNFKQFFQERIKVNCTVRNLSRSVVTIKRSKSKISVSSKVSFSKRYLKY |
Parental | LTKKYLKKNNL |
LTKKYLK.NN. | |
Retrocopy | LTKKYLKNNNI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 34 .80 RPM |
SRP017611_kidney | 0 .00 RPM | 57 .68 RPM |
SRP017611_liver | 0 .00 RPM | 48 .31 RPM |
SRP040447_lung | 0 .00 RPM | 65 .52 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 49 .24 RPM |