RetrogeneDB ID: | retro_cpor_51 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_126:2818546..2818876(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCPOG00000027213 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCPOG00000001149 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 99.08 % |
Parental protein coverage: | 55.33 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MMDCLYAKCIPCITDCVMAEIEKLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVQRVTQHKCYIVAT |
MMDCLYAKCIPCITDCVMAEIEKLGQKYRVALRIAKDPRFERLPCTHKGTYA.DCLVQRVTQHKCYIVAT | |
Retrocopy | MMDCLYAKCIPCITDCVMAEIEKLGQKYRVALRIAKDPRFERLPCTHKGTYANDCLVQRVTQHKCYIVAT |
Parental | VDRDLKRRIRKIPGVPIMYISNHRYNIERMPDDYGAPRF |
VDRDLKRRIRKIPGVPIMYISNHRYNIERMPDDYGAPRF | |
Retrocopy | VDRDLKRRIRKIPGVPIMYISNHRYNIERMPDDYGAPRF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .06 RPM | 16 .22 RPM |
SRP017611_kidney | 0 .10 RPM | 17 .69 RPM |
SRP017611_liver | 0 .00 RPM | 16 .63 RPM |
SRP040447_lung | 0 .08 RPM | 19 .55 RPM |
SRP040447_skeletal_muscle | 0 .04 RPM | 9 .60 RPM |