RetrogeneDB ID: | retro_pabe_1758 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 1_random:15198420..15199019(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FCF1 | ||
Ensembl ID: | ENSPPYG00000005991 | ||
Aliases: | None | ||
Description: | rRNA-processing protein FCF1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q5RFQ0] |
Percent Identity: | 66.83 % |
Parental protein coverage: | 99.49 % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 5 |
Parental | KQKKTRKYATMKRMLSLRDQRLKEKDRLKPKKKEKKDPSALKEREVPQHPSCLFFQYNTQLGPPYHI--L |
KQK.T.K..TMK..LS.RDQRL................S.LKEREVPQHPSCLFFQ..TQLGP.YHI... | |
Retrocopy | KQKETGKHVTMK*ILSVRDQRLXXXXXXXXXXXXXXXLSMLKEREVPQHPSCLFFQ*ITQLGPLYHIGNF |
Parental | VDTNFINFSIKAKLDLVQSMMD-C-LYAKCIPCITDCVMAEIEKLGQKYRVALRIAK-DPRFERLPCTHK |
VDTNFINFSIKAKL.LV....D.C.LYAKCIPCITDCVMAEIEKLGQK..V.L.IAK.DPR.E..PCTHK | |
Retrocopy | VDTNFINFSIKAKLHLVHTVND>CCLYAKCIPCITDCVMAEIEKLGQKCQVILQIAK<DPRSE**PCTHK |
Parental | GTYADDCLVQR-VTQH-KCYIVATVD-RDLKRRIRKIPGV-PIMYISNHRYNIERMPDDYGAPRF |
GTYADDCL......QH..CYIV...D..DLKR.I.KIP.V..IM.IS.HR.NIE.MPDDYGAP.F | |
Retrocopy | GTYADDCLADD<LIQHHQCYIVTMTD<LDLKR*IHKIPSV>VIMCISYHR*NIEQMPDDYGAPQF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 3 .76 RPM |
SRP007412_cerebellum | 0 .00 RPM | 4 .74 RPM |
SRP007412_heart | 0 .00 RPM | 3 .34 RPM |
SRP007412_kidney | 0 .00 RPM | 5 .67 RPM |
SRP007412_liver | 0 .00 RPM | 3 .30 RPM |