RetrogeneDB ID: | retro_mmul_1737 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 3:176698828..176699416(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FCF1 | ||
Ensembl ID: | ENSMMUG00000008887 | ||
Aliases: | None | ||
Description: | rRNA-processing protein FCF1 homolog [Source:RefSeq peptide;Acc:NP_001248471] |
Percent Identity: | 82.83 % |
Parental protein coverage: | 99.49 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | KQKKTRKYATMKRMLSLRDQRLKEKDRLKPKKKEKKDPSALKEREVPQHPSCLFFQYNTQLG-PPYHILV |
.QKK.R.YATMK.MLSLR.QRLKE.DRLKPKK.EKK....LKEREVPQHPSCLFFQYNTQLG.PPYHILV | |
Retrocopy | RQKKSRNYATMKPMLSLRHQRLKERDRLKPKKEEKKESNILKEREVPQHPSCLFFQYNTQLG<PPYHILV |
Parental | DTNFINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQKYRVALR-IAKDPRFERLPCTHKGTY |
DTNFINFSIKAK.D.VQSMM.CL.AKCIP.ITDCVMAEIEKLGQKY.VALR.I..DPRFE.LPCTHKGT. | |
Retrocopy | DTNFINFSIKAKSDSVQSMMNCL*AKCIPYITDCVMAEIEKLGQKY*VALR>ISTDPRFE*LPCTHKGTD |
Parental | ADDCLVQRVTQHKCYIVATVDRDLKRRIRKIPGVPIMYISNHRYNIERMPDDYGAPRF |
ADDCLVQR.TQHKC.IVATVD.DLKRRI.KIPGVPIMYISNHRYNI..M.DD...P.F | |
Retrocopy | ADDCLVQRQTQHKCCIVATVDQDLKRRISKIPGVPIMYISNHRYNIQ*MLDDFEVPGF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .11 RPM | 4 .48 RPM |
SRP007412_brain_prefrontal_cortex | 0 .16 RPM | 3 .89 RPM |
SRP007412_cerebellum | 0 .26 RPM | 3 .42 RPM |
SRP007412_heart | 0 .00 RPM | 3 .12 RPM |
SRP007412_kidney | 0 .23 RPM | 6 .10 RPM |
SRP007412_liver | 0 .00 RPM | 2 .45 RPM |
SRP007412_testis | 0 .15 RPM | 8 .71 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3912 |
Pan troglodytes | retro_ptro_2660 |
Pongo abelii | retro_pabe_3188 |
Callithrix jacchus | retro_cjac_3094 |