RetrogeneDB - Parental gene ENSLACG00000018879 details

							
>ENSLACG00000018879
AATTGCTTGCATGATACAATCTCTGTAAGTTTTAGGGAAATCGATGCTTGTTTTTACCCACAGGGGAAACAAAAGAAGAC

CAGAAAATATGCCACCATGAAACGAATGATTAACCTACGGGATCAGAGGATTAAAGAAAAGGACAGACAAAAGCCCAAGG

AGAAGAAAAAGGATGATCCTAGTGCAATCAAAGAGAGGGAAGTCCTCAAACACCCCTCCTGTCTGTTTTTTCAGTATAAC

ACACAACTTGGTCCTCCTTATTATATTTTGGTTGACACTAACTTCATCAACTTTTCCATCAAAGCCAAACTGGACATCGT

ACAGTCCATGATGGATTGTCTGTATGCAAAATGTATTCCATGCATCACTGATTGTGTAATGGCTGAAATTGAAAAACTGG

GACAAAAGTACAGAGTCGCTCTCCGGATTGCTAAAGACCCACGTTTTGAACGCTTGCCGTGCACGCACAAAGGGACATAT

GCTGACGACTGCTTAGTTCAGAGAGTCACACAGCATAAATGTTACATTGTTGCCACAGTGGACAGAGACCTGAAGAGGAG

AATTAGAAAAATTCCTGGTGTTCCCATCATGTACATTTCCAATCACAGATACAACATTGAAAGAATGCCGGATGACTATG

GTGCTCCAAGA

Library	Parental gene expression (RPM)
DRP000627_pectoral_fin	4 .58 RPM
DRP000627_kidney	1 .36 RPM
DRP000627_pelvic_fin	6 .69 RPM
DRP000627_pharynx	1 .05 RPM
DRP000627_gill	1 .23 RPM
DRP000627_tail_muscle	1 .26 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Ailuropoda melanoleuca	ENSAMEG00000018296	ortholog_many2many	7 retrogenes	retro_amel_1447, retro_amel_1574, retro_amel_435, retro_amel_458, retro_amel_481, retro_amel_526, retro_amel_932,
Bos taurus	ENSBTAG00000020381	ortholog_one2many	1 retrogene	retro_btau_446,
Canis familiaris	ENSCAFG00000016971	ortholog_many2many	3 retrogenes	retro_cfam_142, retro_cfam_205, retro_cfam_95,
Callithrix jacchus	ENSCJAG00000020518	ortholog_one2many	9 retrogenes	retro_cjac_1432, retro_cjac_1615, retro_cjac_1711, retro_cjac_1926, retro_cjac_2158, retro_cjac_3094, retro_cjac_3125, retro_cjac_4092, retro_cjac_4148,
Cavia porcellus	ENSCPOG00000001149	ortholog_many2many	6 retrogenes	retro_cpor_1205, retro_cpor_212, retro_cpor_336, retro_cpor_351, retro_cpor_51, retro_cpor_634,
Equus caballus	ENSECAG00000008261	ortholog_one2many	1 retrogene	retro_ecab_423,
Erinaceus europaeus	ENSEEUG00000007173	ortholog_one2many	1 retrogene	retro_eeur_491,
Felis catus	ENSFCAG00000022753	ortholog_many2many	3 retrogenes	retro_fcat_1461, retro_fcat_523, retro_fcat_685,
Homo sapiens	ENSG00000119616	ortholog_one2many	6 retrogenes	retro_hsap_2686, retro_hsap_3040, retro_hsap_383, retro_hsap_3912, retro_hsap_4724, retro_hsap_535,
Gorilla gorilla	ENSGGOG00000016318	ortholog_many2many	3 retrogenes	retro_ggor_1872, retro_ggor_2507, retro_ggor_3080,
Loxodonta africana	ENSLAFG00000000724	ortholog_many2many	1 retrogene	retro_lafr_81,
Microcebus murinus	ENSMICG00000006061	ortholog_one2many	5 retrogenes	retro_mmur_1175, retro_mmur_832, retro_mmur_86, retro_mmur_906, retro_mmur_968,
Macaca mulatta	ENSMMUG00000008887	ortholog_one2many	8 retrogenes	retro_mmul_1306, retro_mmul_1422, retro_mmul_1704, retro_mmul_1737, retro_mmul_1891, retro_mmul_459, retro_mmul_492, retro_mmul_685,
Monodelphis domestica	ENSMODG00000006179	ortholog_one2many	5 retrogenes	retro_mdom_1729, retro_mdom_622, retro_mdom_635, retro_mdom_820, retro_mdom_846,
Mustela putorius furo	ENSMPUG00000009321	ortholog_one2many	7 retrogenes	retro_mputfur_1002, retro_mputfur_1131, retro_mputfur_1306, retro_mputfur_1315, retro_mputfur_1621, retro_mputfur_532, retro_mputfur_891,
Mus musculus	ENSMUSG00000021243	ortholog_one2many	3 retrogenes	retro_mmus_1575, retro_mmus_2358, retro_mmus_3268,
Nomascus leucogenys	ENSNLEG00000016311	ortholog_one2many	7 retrogenes	retro_nleu_1145, retro_nleu_1185, retro_nleu_1789, retro_nleu_1927, retro_nleu_1994, retro_nleu_686, retro_nleu_874,
Oryctolagus cuniculus	ENSOCUG00000014120	ortholog_many2many	1 retrogene	retro_ocun_96,
Otolemur garnettii	ENSOGAG00000002711	ortholog_many2many	19 retrogenes	retro_ogar_1007, retro_ogar_1114, retro_ogar_1666, retro_ogar_1955, retro_ogar_2035, retro_ogar_2167, retro_ogar_2240, retro_ogar_2336, retro_ogar_2482, retro_ogar_2939, retro_ogar_3232, retro_ogar_3432, retro_ogar_3486, retro_ogar_3488, retro_ogar_503, retro_ogar_651, retro_ogar_739, retro_ogar_79, retro_ogar_972,
Pongo abelii	ENSPPYG00000005991	ortholog_one2many	10 retrogenes	retro_pabe_1758, retro_pabe_214, retro_pabe_2295, retro_pabe_2437, retro_pabe_2613, retro_pabe_2685, retro_pabe_3188, retro_pabe_326, retro_pabe_3668, retro_pabe_3830,
Pan troglodytes	ENSPTRG00000006540	ortholog_one2many	6 retrogenes	retro_ptro_1813, retro_ptro_1998, retro_ptro_2660, retro_ptro_297, retro_ptro_3142, retro_ptro_401,
Pteropus vampyrus	ENSPVAG00000000657	ortholog_one2many	3 retrogenes	retro_pvam_1169, retro_pvam_1272, retro_pvam_454,
Rattus norvegicus	ENSRNOG00000004723	ortholog_one2many	5 retrogenes	retro_rnor_2539, retro_rnor_2591, retro_rnor_2658, retro_rnor_771, retro_rnor_818,
Sorex araneus	ENSSARG00000003270	ortholog_one2many	3 retrogenes	retro_sara_126, retro_sara_177, retro_sara_375,
Ictidomys tridecemlineatus	ENSSTOG00000008083	ortholog_one2many	4 retrogenes	retro_itri_1149, retro_itri_297, retro_itri_599, retro_itri_850,
Tupaia belangeri	ENSTBEG00000013557	ortholog_one2many	30 retrogenes	retro_tbel_1190, retro_tbel_1261, retro_tbel_135, retro_tbel_1397, retro_tbel_1457, retro_tbel_1576, retro_tbel_182, retro_tbel_222, retro_tbel_2578, retro_tbel_2996, retro_tbel_3037, retro_tbel_3060, retro_tbel_3075, retro_tbel_3105, retro_tbel_3152, retro_tbel_3360, retro_tbel_342, retro_tbel_3564, retro_tbel_3568, retro_tbel_3661, retro_tbel_3694, retro_tbel_3797, retro_tbel_3923, retro_tbel_4463, retro_tbel_4506, retro_tbel_4571, retro_tbel_4645, retro_tbel_580, retro_tbel_776, retro_tbel_966,
Tarsius syrichta	ENSTSYG00000006327	ortholog_one2many	3 retrogenes	retro_tsyr_1016, retro_tsyr_1418, retro_tsyr_621,
Tursiops truncatus	ENSTTRG00000002440	ortholog_one2many	3 retrogenes	retro_ttru_1447, retro_ttru_1691, retro_ttru_584,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_lcha_9	99.49	90.32	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSLACG00000018879 retrocopies

Parental gene:	ENSLACG00000018879
Aliases:	None
Description:	None
Organism:	*Coelacanth (Latimeria chalumnae)*
Coordinates:	JH126565.1:5088762..5101975(+)

Parental gene:

ENSLACG00000018879