RetrogeneDB ID: | retro_cjac_4092 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | X:76875757..76876059(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FCF1 | ||
Ensembl ID: | ENSCJAG00000020518 | ||
Aliases: | None | ||
Description: | FCF1 rRNA-processing protein [Source:HGNC Symbol;Acc:20220] |
Percent Identity: | 67.96 % |
Parental protein coverage: | 51.52 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | LYAKCIPC-ITDCVMAEIEKLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVQRVTQHKCYIVATVDR |
LY.KCIP..I...VMAEIE...QK..VALRI.K..RFE.L.CTH..T..DDCL.QRV.QHK.YIV.TVD. | |
Retrocopy | LYTKCIPK<INNFVMAEIETFRQK*LVALRITKY*RFEYLACTH*ITFEDDCLAQRVIQHKFYIVVTVDQ |
Parental | DLKRRIRKIPGVPIMYISNHRYNIERMPDDYGA |
DLK..I.KIPG..IMYISN.RYNIE.MPD.YGA | |
Retrocopy | DLK-*IWKIPGAHIMYISNYRYNIEWMPDNYGA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .02 RPM | 3 .31 RPM |
SRP051959_heart | 0 .12 RPM | 3 .16 RPM |
SRP051959_kidney | 0 .00 RPM | 4 .99 RPM |
SRP051959_liver | 0 .00 RPM | 4 .25 RPM |
SRP051959_lung | 0 .00 RPM | 5 .45 RPM |
SRP051959_lymph_node | 0 .00 RPM | 5 .89 RPM |
SRP051959_skeletal_muscle | 0 .00 RPM | 3 .30 RPM |
SRP051959_spleen | 0 .00 RPM | 6 .24 RPM |