RetrogeneDB ID: | retro_mdom_1729 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 7:112014116..112014590(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FCF1 | ||
Ensembl ID: | ENSMODG00000006179 | ||
Aliases: | None | ||
Description: | FCF1 rRNA-processing protein [Source:HGNC Symbol;Acc:20220] |
Percent Identity: | 79.11 % |
Parental protein coverage: | 75.24 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 0 |
Parental | SALKEREVPQHPSCLFFQYNTQLGPPYYILVDTNFINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEI |
SALKEREVPQ.PS.LFF..N.QLGP.YYILVD.N.INFSIK.KLDL.Q.M.DCL.AKCIPCITDCVMAE. | |
Retrocopy | SALKEREVPQYPSFLFF*CNIQLGPHYYILVDINLINFSIKVKLDLMQ*MVDCLHAKCIPCITDCVMAET |
Parental | EKLGQKYRVALRIAKDPRFERLPCSHKGTYADDCLVQRVTQHKCYIVATVDRDLKRRIRKIPGVPIMYIS |
E.L.QKY.VALRIAKDP.FE.LPCSHKG...DDCLVQ.VTQH.CYIVATVD..L..RI.KIPGVPIMYIS | |
Retrocopy | E*LEQKY*VALRIAKDPQFEYLPCSHKGIFSDDCLVQIVTQHECYIVATVDWELN*RIWKIPGVPIMYIS |
Parental | NHRYNIERMPDDYGAPRL |
NHRYNI.RM.D.Y.APRL | |
Retrocopy | NHRYNIKRMSDGYAAPRL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 51 .25 RPM |
SRP007412_cerebellum | 0 .00 RPM | 53 .87 RPM |
SRP007412_heart | 0 .00 RPM | 67 .58 RPM |
SRP007412_kidney | 0 .00 RPM | 123 .78 RPM |
SRP007412_liver | 0 .00 RPM | 127 .38 RPM |
SRP007412_testis | 0 .00 RPM | 210 .77 RPM |