RetrogeneDB ID: | retro_cpor_61 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_4:28063391..28063778(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCPOG00000004136 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PCBD1 | ||
Ensembl ID: | ENSCPOG00000012703 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 61.7 % |
Parental protein coverage: | 91.26 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | LSAEERDQLLPNLRAVGWNELEGRDAIFKQFHFKDFNRAFGFMTRVALQAEKLDHHPEWFNVYNKVHITL |
L.AEER.Q.L..L..VG..EL..R.AI.K.F.FK.FN.AFGFM.RVALQAEK..HHPEWFNVY.KV..TL | |
Retrocopy | LIAEERNQILLDLKNVGCSELSERNAIYKEFSFKNFNQAFGFMSRVALQAEKINHHPEWFNVY-KVQLTL |
Parental | STHECAGLSERDINLASFIEQVAV |
..H.C.GL..RD..LA.FIE.... | |
Retrocopy | TSHDCGGLTKRDVQLAKFIEKASI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .75 RPM | 6 .04 RPM |
SRP017611_kidney | 1 .88 RPM | 48 .99 RPM |
SRP017611_liver | 0 .61 RPM | 168 .41 RPM |
SRP040447_lung | 1 .79 RPM | 41 .77 RPM |
SRP040447_skeletal_muscle | 0 .24 RPM | 6 .41 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000011866 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000012703 | 1 retrocopy |
retro_cpor_61 ,
|
Felis catus | ENSFCAG00000001235 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000001397 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000016074 | 3 retrocopies | |
Procavia capensis | ENSPCAG00000007201 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000010275 | 1 retrocopy | |
Takifugu rubripes | ENSTRUG00000017869 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000005775 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000004496 | 1 retrocopy |