Parental gene:

PCBD1, ENSSSCG00000010275

Aliases:None
Description:pterin-4 alpha-carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha [Source:HGNC Symbol;Acc:8646]
Organism:Pig (Sus scrofa)
Coordinates:14:79648885..79655375(-)


>ENSSSCG00000010275
ATGGCTGGCAAAGCGCACAGGCTAAGTGCGGAGGAGAGGGACCAGCTGCTGCCAAACCTGCGGGCCGTGGGGTGGAACGA
GCTGGAAGGCCGGGATGCCATCTTCAAGCAGTTTCATTTCAAAGACTTCAATAGGGCTTTTGGCTTCATGACGAGAGTGG
CCCTGCAGGCTGAGAAATTGGACCACCACCCTGAATGGTTTAACGTGTACAACAAGGTCCACATCACCCTGAGCACCCAC
GAGTGTGCGGGCCTTTCAGAACGGGACATAAACCTGGCCAGCTTCATCGAGCAAGTAGCGGTGTCCATGACATAG

Library Parental gene expression (RPM)
SRP014902_placenta 18 .45 RPM
SRP014902_testis 54 .88 RPM
SRP018856_adipose 97 .91 RPM
SRP018288_kidney 81 .76 RPM
SRP018288_lung 34 .32 RPM
SRP018288_liver 308 .15 RPM
SRP018288_heart 21 .79 RPM
SRP035408_liver 183 .18 RPM
SRP035408_brain 19 .18 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000011866 ortholog_one2one 1 retrogene
retro_btau_1478,
Cavia porcellus ENSCPOG00000012703 ortholog_one2one 1 retrogene
retro_cpor_61,
Felis catus ENSFCAG00000001235 ortholog_one2one 1 retrogene
retro_fcat_1478,
Loxodonta africana ENSLAFG00000001397 ortholog_one2one 1 retrogene
retro_lafr_1028,
Myotis lucifugus ENSMLUG00000016074 ortholog_one2one 3 retrogenes
retro_mluc_1534, retro_mluc_2459, retro_mluc_462,
Procavia capensis ENSPCAG00000007201 ortholog_one2one 1 retrogene
retro_pcap_46,
Takifugu rubripes ENSTRUG00000017869 ortholog_one2one 1 retrogene
retro_trub_26,
Tursiops truncatus ENSTTRG00000005775 ortholog_one2one 1 retrogene
retro_ttru_1541,
Vicugna pacos ENSVPAG00000004496 ortholog_one2one 1 retrogene
retro_vpac_69,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_744 79.12 85.58
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Download FASTA sequences of all ENSSSCG00000010275 retrocopies