RetrogeneDB ID: | retro_pcap_46 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | GeneScaffold_2401:8423..8732(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PCBD1 | ||
Ensembl ID: | ENSPCAG00000007201 | ||
Aliases: | None | ||
Description: | pterin-4 alpha-carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha [Source:HGNC Symbol;Acc:8646] |
Percent Identity: | 68.27 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MAGKAHRLSAEERDQLLPNLRAVGWNELEGRDAIFKQFHFKDFNRAFGFMTRVALQAEKLDHHPEWFNVY |
MAGKA..LS..E..QLLP...AVGWNE.EG.DAIFKQFHF.DFNRA.GF.T.V.LQAEKLDH.PE.F.VY | |
Retrocopy | MAGKAQKLSIKESNQLLPHMSAVGWNEMEGHDAIFKQFHFSDFNRASGFTTKVVLQAEKLDHYPESFQVY |
Parental | NKVHITLSTHECAGLSERDINLASFIEQVAVSMT |
.K..ITLS.H..AGLS...INL..FI..VA.SMT | |
Retrocopy | -KGDITLSIHDYAGLSK*GINLTIFIK*VALSMT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000011866 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000012703 | 1 retrocopy | |
Felis catus | ENSFCAG00000001235 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000001397 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000016074 | 3 retrocopies | |
Procavia capensis | ENSPCAG00000007201 | 1 retrocopy |
retro_pcap_46 ,
|
Sus scrofa | ENSSSCG00000010275 | 1 retrocopy | |
Takifugu rubripes | ENSTRUG00000017869 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000005775 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000004496 | 1 retrocopy |