RetrogeneDB ID: | retro_mluc_2459 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL430445:48507..48809(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PCBD1 | ||
Ensembl ID: | ENSMLUG00000016074 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 76.64 % |
Parental protein coverage: | 96.12 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | AGKAH-RLSAEERDQLLPNLRAVG---WNELEGRDA-IFKQFHFKDFNRAFGFMTRVALQ-AEKLDHHPE |
AGKAH.RLSAEERDQLLPNLRA.....WNE.EGRDA.IFKQ.HF.DF.RA.GFMTRVALQ.AEKLD..PE | |
Retrocopy | AGKAH<RLSAEERDQLLPNLRAXXXXXWNEREGRDA<IFKQVHFQDFSRALGFMTRVALQ<AEKLDRRPE |
Parental | WFNVYNKVHITLST-HECAGLSE-RDINLASFIEQVA |
.FNVY.K.HITLST...CAGLS..RDINLASFI.Q.A | |
Retrocopy | RFNVY-KAHITLST<RACAGLSDGRDINLASFIQQAA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000011866 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000012703 | 1 retrocopy | |
Felis catus | ENSFCAG00000001235 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000001397 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000012638 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000016074 | 3 retrocopies |
retro_mluc_1534, retro_mluc_2459 , retro_mluc_462,
|
Procavia capensis | ENSPCAG00000007201 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000010275 | 1 retrocopy | |
Takifugu rubripes | ENSTRUG00000017869 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000005775 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000004496 | 1 retrocopy |