RetrogeneDB ID: | retro_cpor_969 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_37:17635030..17636289(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PAICS | ||
Ensembl ID: | ENSCPOG00000010749 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 91.02 % |
Parental protein coverage: | 98.82 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | VLKIGKKLYEGKTKEVYELLDSPGKVLLQSKDQITAGNAARKNHLEGKAAISNKITSCIFELLQEAGIKT |
VL..GKKLYEGKTKEVY.LLDSPG.VLLQSKDQITAGNAARKNHLEGKAAIS.KITS.IFELLQEAGIK. | |
Retrocopy | VLNTGKKLYEGKTKEVYGLLDSPGEVLLQSKDQITAGNAARKNHLEGKAAISSKITSSIFELLQEAGIKA |
Parental | AFTRKCGETAFIAPQCEMIPIEWVCRRIATGSFLKRNPGVKEGFKFYPPKVELFFKDDANNDPQWSEEQL |
AFTRKCGETAF.APQCEMIPIEWVCRRIA.GSFLKRNPGVKEGFKFYPPKVELFFKDDANNDPQWSEEQL | |
Retrocopy | AFTRKCGETAFTAPQCEMIPIEWVCRRIAAGSFLKRNPGVKEGFKFYPPKVELFFKDDANNDPQWSEEQL |
Parental | IAAKFCFAGLVIGQTEVDIMSHATQAIFEILEKSWLPQNCTLVDMKIEFGVDVTTKEIVLADVIDNDSWR |
IAAKFCFAGLV.GQTEVDIMSHATQAIFEILEKSWLPQNC.LVDMKI..GVDVTTKEIVLADV.DNDSWR | |
Retrocopy | IAAKFCFAGLVTGQTEVDIMSHATQAIFEILEKSWLPQNCMLVDMKIGCGVDVTTKEIVLADVTDNDSWR |
Parental | LWPSGDRSQQKD-KQSYRDLKEVTPEGLQMVKKNFEWVAERVELLLKSESQCRVVVLMGSTSDLGHCEKI |
LWPSGDRSQQKD.KQSYRDL.EVTP.GLQMVKKNFEWVAERVE.LLKSE.QCRVVVLMGSTSD.GHCEKI | |
Retrocopy | LWPSGDRSQQKD>KQSYRDLAEVTPGGLQMVKKNFEWVAERVE-LLKSEGQCRVVVLMGSTSDVGHCEKI |
Parental | KKACGNYGIPCELRVTSAHKGPDETLRIKAEYEGDGIPTVFVAVAGRSN-GLGPVMSGNTAYPVISCPP- |
KKACGNYGIPCELRVTSAHKG.DETL.IKAEYEGD.I.TVFVA.AGRSN..LGPVMSGNTA.PVISCP.. | |
Retrocopy | KKACGNYGIPCELRVTSAHKGSDETL-IKAEYEGDAILTVFVAIAGRSNVSLGPVMSGNTANPVISCPQ> |
Parental | LTSDWGAQDVWSSLRLPSGLGCSTILSPEGSAQFAAQIFGLNNHLVWAKLRANILNTWIALKQADKKIRE |
L.S.WGA.DVWSSL.LP.GLGCS.ILSPEGSAQFAAQIFGLNNHLVWAKL.ANILNTWIALKQA.KKIRE | |
Retrocopy | LISAWGARDVWSSL*LPRGLGCSIILSPEGSAQFAAQIFGLNNHLVWAKL*ANILNTWIALKQANKKIRE |
Parental | CNF |
CNF | |
Retrocopy | CNF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .17 RPM | 20 .65 RPM |
SRP017611_kidney | 0 .21 RPM | 104 .69 RPM |
SRP017611_liver | 0 .17 RPM | 35 .52 RPM |
SRP040447_lung | 0 .03 RPM | 29 .41 RPM |
SRP040447_skeletal_muscle | 0 .04 RPM | 27 .03 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000010577 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000010749 | 1 retrocopy |
retro_cpor_969 ,
|
Dasypus novemcinctus | ENSDNOG00000013413 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000015242 | 2 retrocopies | |
Homo sapiens | ENSG00000128050 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000024392 | 1 retrocopy | |
Mus musculus | ENSMUSG00000029247 | 6 retrocopies | |
Nomascus leucogenys | ENSNLEG00000008786 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000003575 | 2 retrocopies | |
Procavia capensis | ENSPCAG00000008531 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000016081 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000002101 | 3 retrocopies | |
Tupaia belangeri | ENSTBEG00000006751 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000010497 | 2 retrocopies | |
Drosophila melanogaster | FBgn0020513 | 1 retrocopy |