RetrogeneDB ID: | retro_mmus_1748 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 18:6029178..6030438(-) | ||
Located in intron of: | ENSMUSG00000041225 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Paics | ||
Ensembl ID: | ENSMUSG00000029247 | ||
Aliases: | Paics, 2610511I09Rik, ADE2H1, AIRC, PAIS | ||
Description: | phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304] |
Percent Identity: | 93.4 % |
Parental protein coverage: | 98.59 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | VNIGKKLYEGKTKEVYELLDTPGRVLLQSKDQITAGNAARKNH-LEGKAAISNKITSCIFQLLQEAGIKT |
VNIGKKLYEGKTKEVYELLD.PGRVLLQSKDQITAGNAARKNH.LEGKA..SNKITS.I.QLLQEAG.KT | |
Retrocopy | VNIGKKLYEGKTKEVYELLDNPGRVLLQSKDQITAGNAARKNH<LEGKATVSNKITSHISQLLQEAGLKT |
Parental | AFTKKCGETA-FIAPQCEMIPIEWVCRRI-ATGSFLKRNPGVQEGYKFYPPKVEMFFKDDANNDPQWSEE |
AFTKKCGETA.FIAPQCEMIPIEWVCRR..ATGSFLKRNPGVQEGYKFYPPKVEMFFKDDANNDPQ.SEE | |
Retrocopy | AFTKKCGETAAFIAPQCEMIPIEWVCRRK<ATGSFLKRNPGVQEGYKFYPPKVEMFFKDDANNDPQCSEE |
Parental | QLIAAKFCFAGLVIGQTEVDIMSHATQAIFEILEKSWLPQDCTLVDMKIEFGVDV-TTKEIVLADVIDND |
QLIAAK.CFAGLVIGQTEVDIMSHATQAIFEILEKSWLPQ.CTLVDMKIEFGVDV.TTKEIVLADVIDND | |
Retrocopy | QLIAAKVCFAGLVIGQTEVDIMSHATQAIFEILEKSWLPQNCTLVDMKIEFGVDV>TTKEIVLADVIDND |
Parental | SWRLWPSGDRSQQKDKQSYRDLKEVTPEGLQMVKKNFEWVADRVELLLKSDSQCRVVVLMGSTSDLGHCE |
SWRLWPSGD.SQQKDKQSY.DLKEVTPEGLQMVKKNFEWVAD.VELLLKSDSQCRVVV.MG.TSDLGHCE | |
Retrocopy | SWRLWPSGDQSQQKDKQSYHDLKEVTPEGLQMVKKNFEWVAD*VELLLKSDSQCRVVVPMGFTSDLGHCE |
Parental | KIKKACGNFGIPCELRVTSAHKGPDETLRIKAEYEGDGIPTVFVSVAGRSNGLGPVLSGNTAYPVISCPP |
.IKKACGNFGIPCELRVTS.HKGPDETLRIKAEYEGDGIPTVFV.VAGRSNGLGPVLSGNTAYP.ISCPP | |
Retrocopy | EIKKACGNFGIPCELRVTSTHKGPDETLRIKAEYEGDGIPTVFVAVAGRSNGLGPVLSGNTAYPAISCPP |
Parental | ITPDWGAQDVWSSLRLPSGIGCSTILSPEGSAQFAAQIFGLNNHLVWAKLRASILNTWISLKQAD-KKVR |
.TPDWGAQDVWSSLRLPSG.GCSTILSPEGSAQFAAQIFGLNNHLVWAKLRASILNTWI.LKQAD.KK.R | |
Retrocopy | TTPDWGAQDVWSSLRLPSGLGCSTILSPEGSAQFAAQIFGLNNHLVWAKLRASILNTWIALKQAD>KKIR |
Parental | QCNL |
QCNL | |
Retrocopy | QCNL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .33 RPM | 72 .47 RPM |
SRP007412_cerebellum | 0 .48 RPM | 76 .99 RPM |
SRP007412_heart | 0 .47 RPM | 100 .89 RPM |
SRP007412_kidney | 0 .77 RPM | 159 .50 RPM |
SRP007412_liver | 0 .30 RPM | 189 .96 RPM |
SRP007412_testis | 0 .46 RPM | 40 .07 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000010577 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000010749 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000013413 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000015242 | 2 retrocopies | |
Homo sapiens | ENSG00000128050 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000024392 | 1 retrocopy | |
Mus musculus | ENSMUSG00000029247 | 6 retrocopies |
retro_mmus_1748 , retro_mmus_2750, retro_mmus_2858, retro_mmus_3126, retro_mmus_653, retro_mmus_971,
|
Nomascus leucogenys | ENSNLEG00000008786 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000003575 | 2 retrocopies | |
Procavia capensis | ENSPCAG00000008531 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000016081 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000002101 | 3 retrocopies | |
Tupaia belangeri | ENSTBEG00000006751 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000010497 | 2 retrocopies | |
Drosophila melanogaster | FBgn0020513 | 1 retrocopy |