RetrogeneDB ID: | retro_mmus_971 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 12:99804386..99805153(-) | ||
Located in intron of: | ENSMUSG00000021176 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Paics | ||
Ensembl ID: | ENSMUSG00000029247 | ||
Aliases: | Paics, 2610511I09Rik, ADE2H1, AIRC, PAIS | ||
Description: | phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304] |
Percent Identity: | 84.62 % |
Parental protein coverage: | 60.94 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | HATQAIFEILEKSWLPQDCTLVDMKIEFGVDVTTKEIVLADVIDNDSWRLWPSGDRSQQKDKQSYRDLKE |
HATQAIF.ILEK.WL.QDC.LV.MK.EFGVDVTTKE.VLADVIDNDSWRLWPSGD.SQ.K....YRDLKE | |
Retrocopy | HATQAIFGILEKFWLTQDCMLVAMKFEFGVDVTTKETVLADVIDNDSWRLWPSGDQSQ*K---AYRDLKE |
Parental | VTPEGLQMVKKNFEWVADRVELLLKSDSQCRVVVLMGSTSDLGHCEKIKKACGNFGIPCELRVTSAHKGP |
VTPEGLQMVKK..EW.ADRVEL.LKSDSQCR.VV.MGSTSDLGHCE.IKKACGNFGI.CELRVTS.HKG. | |
Retrocopy | VTPEGLQMVKKDAEWLADRVELRLKSDSQCRMVVPMGSTSDLGHCETIKKACGNFGILCELRVTSVHKGS |
Parental | DETLRIKAEYEGDGIPTVFVSVAGRSNGLGPVLSGNTAYPVISCPPITPDWGAQDVWSSLRLPSGIGCST |
DETLR..A.YEGDGI.TVFV.V.GR.NGLGPV.SGNTAYPVISCPPITPDWGAQD.WSSL.LPSG.GCST | |
Retrocopy | DETLRTRAKYEGDGIATVFVAVTGRRNGLGPVMSGNTAYPVISCPPITPDWGAQDEWSSL*LPSGLGCST |
Parental | ILSPEGSAQFAAQIFGLNNHLVWAKLRASILNTWIS-LKQADKKVRQCNL |
ILSPEGSA.FAAQIFGLNNH.VWAKLRASILNTW.S.LKQAD.KVR.CNL | |
Retrocopy | ILSPEGSAKFAAQIFGLNNHMVWAKLRASILNTWTS<LKQADEKVRECNL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .02 RPM | 72 .47 RPM |
SRP007412_cerebellum | 0 .00 RPM | 76 .99 RPM |
SRP007412_heart | 0 .00 RPM | 100 .89 RPM |
SRP007412_kidney | 0 .00 RPM | 159 .50 RPM |
SRP007412_liver | 0 .00 RPM | 189 .96 RPM |
SRP007412_testis | 0 .14 RPM | 40 .07 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000010577 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000010749 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000013413 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000015242 | 2 retrocopies | |
Homo sapiens | ENSG00000128050 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000024392 | 1 retrocopy | |
Mus musculus | ENSMUSG00000029247 | 6 retrocopies |
retro_mmus_1748, retro_mmus_2750, retro_mmus_2858, retro_mmus_3126, retro_mmus_653, retro_mmus_971 ,
|
Nomascus leucogenys | ENSNLEG00000008786 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000003575 | 2 retrocopies | |
Procavia capensis | ENSPCAG00000008531 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000016081 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000002101 | 3 retrocopies | |
Tupaia belangeri | ENSTBEG00000006751 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000010497 | 2 retrocopies | |
Drosophila melanogaster | FBgn0020513 | 1 retrocopy |