RetrogeneDB ID: | retro_mmus_2858 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 6:95925749..95926465(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Paics | ||
Ensembl ID: | ENSMUSG00000029247 | ||
Aliases: | Paics, 2610511I09Rik, ADE2H1, AIRC, PAIS | ||
Description: | phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304] |
Percent Identity: | 75.82 % |
Parental protein coverage: | 56.24 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 5 |
Parental | DCTLVDMKIEFGVDVTTKEIVLADVIDNDSWRLWPSGDRSQQKDKQSY-RDLKEVTPEGLQMVKKNFEWV |
D..........GVDVTTKEIVLADVIDNDSWRLWPSGDRSQ.KDK.....D.KEV.PEGL..VKKNF.W. | |
Retrocopy | DVDIMNHVTQLGVDVTTKEIVLADVIDNDSWRLWPSGDRSQHKDKTAF>HDIKEVMPEGLHVVKKNFKWA |
Parental | ADRVELLLKSDSQCRVVVLMGSTSDLGHC-EKIKKACGNFGIPCELRVTSAHKGPDETLRIKAEYEGDGI |
ADRVELLL.SDSQCRVVVLMG.TSDLGHC......ACGN.GI.CELRVTSAHKGPDETLR.KA.YEG.GI | |
Retrocopy | ADRVELLLNSDSQCRVVVLMGLTSDLGHC>XXXXXACGNYGILCELRVTSAHKGPDETLRVKAVYEGGGI |
Parental | PTVFVSVA-GRSNGLGPVLSGNTAYPVISCPPITPDWGAQDVWSSLRLP-SGIGCSTILSPEGSAQFAAQ |
.TVFV.VA..RSNGLGPV.S.NTAY.VI.CPP.TPDWGAQ.VWSSL.LP..G..CSTILSPEGSAQFAAQ | |
Retrocopy | GTVFVTVA<SRSNGLGPVMSSNTAYLVIGCPPTTPDWGAQGVWSSL*LP<QGFDCSTILSPEGSAQFAAQ |
Parental | IFGLNNHLVWAKLRASIL-NTWISLKQADKKVRQ |
IFGLNNHLVWAKL.AS.L....ISLKQ.DKK.R. | |
Retrocopy | IFGLNNHLVWAKLQASSL<EKEISLKQDDKKIRE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .30 RPM | 72 .47 RPM |
SRP007412_cerebellum | 0 .00 RPM | 76 .99 RPM |
SRP007412_heart | 0 .00 RPM | 100 .89 RPM |
SRP007412_kidney | 0 .00 RPM | 159 .50 RPM |
SRP007412_liver | 0 .00 RPM | 189 .96 RPM |
SRP007412_testis | 0 .00 RPM | 40 .07 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000010577 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000010749 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000013413 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000015242 | 2 retrocopies | |
Homo sapiens | ENSG00000128050 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000024392 | 1 retrocopy | |
Mus musculus | ENSMUSG00000029247 | 6 retrocopies |
retro_mmus_1748, retro_mmus_2750, retro_mmus_2858 , retro_mmus_3126, retro_mmus_653, retro_mmus_971,
|
Nomascus leucogenys | ENSNLEG00000008786 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000003575 | 2 retrocopies | |
Procavia capensis | ENSPCAG00000008531 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000016081 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000002101 | 3 retrocopies | |
Tupaia belangeri | ENSTBEG00000006751 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000010497 | 2 retrocopies | |
Drosophila melanogaster | FBgn0020513 | 1 retrocopy |