RetrogeneDB ID: | retro_nleu_1274 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397287.1:11378226..11379291(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSNLEG00000009481 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PAICS | ||
Ensembl ID: | ENSNLEG00000008786 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 97.46 % |
Parental protein coverage: | 77.51 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | SGIKTAFTRKCGETAFIAPQCEMIPIEWVCRRIATGSFLKRNPGVKEGYKFYPPKVELFFKDDANNDPQW |
.GIKTAFTRKCGETAFIAPQCEMIPIEWVCRRIATGSFLK.NPGVKEGYKFYPPKVELFFKDDANNDPQW | |
Retrocopy | AGIKTAFTRKCGETAFIAPQCEMIPIEWVCRRIATGSFLKANPGVKEGYKFYPPKVELFFKDDANNDPQW |
Parental | SEEQLIAAKFCFAGLVIGQTEVDIMSHATQAIFEILEKSWLPQNCTLVDMKIEFGVDVTTKEIVLADVID |
SEEQLIAAKFCFAGL.IGQTEV.IMSHATQAIFEILEKSWLPQNCTLVDMKIEFGVDVTTKEIVLADVID | |
Retrocopy | SEEQLIAAKFCFAGLIIGQTEVGIMSHATQAIFEILEKSWLPQNCTLVDMKIEFGVDVTTKEIVLADVID |
Parental | NDSWRLWPSGDRSQQKDKQSYRDLKEVTPEGLQMVKKNFEWVAERVELLLKSESQCRVVVLMGSTSDLGH |
NDSWRLWPSGDRSQQKDKQSYRDLKEVTPEGLQMVKKNFEWVA.RVELLLKSESQCRVVVLMGSTSDLGH | |
Retrocopy | NDSWRLWPSGDRSQQKDKQSYRDLKEVTPEGLQMVKKNFEWVAQRVELLLKSESQCRVVVLMGSTSDLGH |
Parental | CEKIKKACGNFGIPCELRVTSAHKGPDETLRIKAEYEGDGIPTVFVAVAGRSNGLGPVMSGNTAYPVISC |
CEKIKK.CGNFGIPCELRVTSAHKGPDETLRIKAEYEGDGIPTVFVAVAGR.NGLGPVMSGNTAYPVISC | |
Retrocopy | CEKIKKSCGNFGIPCELRVTSAHKGPDETLRIKAEYEGDGIPTVFVAVAGRRNGLGPVMSGNTAYPVISC |
Parental | PPLTPDWGAQDVWSSLRLPSGLGCSTILSPEGSAQFAAQIFGLNNHLVWSKLRASILNTWISLKQADKKI |
PPLTPDWGAQDV.SSLRLPSGLGCSTILSPEGSAQFAAQIFGLNNHLVWSKL.ASILNTWISLKQADKKI | |
Retrocopy | PPLTPDWGAQDVCSSLRLPSGLGCSTILSPEGSAQFAAQIFGLNNHLVWSKLQASILNTWISLKQADKKI |
Parental | RECNL |
RECNL | |
Retrocopy | RECNL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000010577 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000010749 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000013413 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000015242 | 2 retrocopies | |
Homo sapiens | ENSG00000128050 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000024392 | 1 retrocopy | |
Mus musculus | ENSMUSG00000029247 | 6 retrocopies | |
Nomascus leucogenys | ENSNLEG00000008786 | 2 retrocopies |
retro_nleu_1274 , retro_nleu_2156,
|
Otolemur garnettii | ENSOGAG00000003575 | 2 retrocopies | |
Procavia capensis | ENSPCAG00000008531 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000016081 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000002101 | 3 retrocopies | |
Tupaia belangeri | ENSTBEG00000006751 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000010497 | 2 retrocopies | |
Drosophila melanogaster | FBgn0020513 | 1 retrocopy |