RetrogeneDB ID: | retro_tbel_3697 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_148748:17087..17998(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PAICS | ||
Ensembl ID: | ENSTBEG00000006751 | ||
Aliases: | None | ||
Description: | phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase [Source:HGNC Symbol;Acc:8587] |
Percent Identity: | 79.35 % |
Parental protein coverage: | 67.63 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 5 |
Parental | KLYEGKTKEVYELLDSPGKVLLQSKDQITAGNAARKNHLEGKAAISNKTTSCIFQLLQEAGIKTAFTRKC |
K.Y.GKTKEVYELL.SPGKVL.QSK.QITAGNAARKNHLEGK.AISNK.TSCI.QLL.EA..K.AFTRKC | |
Retrocopy | KNYGGKTKEVYELLNSPGKVLQQSKGQITAGNAARKNHLEGKDAISNKITSCISQLLLEADTKIAFTRKC |
Parental | GETAFIAPQCEMIPIEWVCR-RIATGSFLKRNPGVKEGYKFYPPKVELFFKDDANNDPQWSEEQLIAAKF |
.ET..IAPQCEMIP.EWVC..RI.TGSFLKRNPG.KEGYKFYPPKV.LFFKDDANND.QWSEEQL.AAKF | |
Retrocopy | AETTSIAPQCEMIPVEWVCK>RIPTGSFLKRNPGIKEGYKFYPPKVKLFFKDDANNDQQWSEEQLMAAKF |
Parental | CFAGLEIGQTEVDIMSHATQAIFEILERSWLPQNCTLVDMKIEFGVDVTTKEIVLADVIDNDSWRLWPSG |
CF.GL.IGQTEVD.MSHATQAIFEILE.SWLPQNCTLVDMKIEFGVDVTTKEIVLADV.DNDSWRL.PSG | |
Retrocopy | CFTGLVIGQTEVDTMSHATQAIFEILEKSWLPQNCTLVDMKIEFGVDVTTKEIVLADVVDNDSWRLQPSG |
Parental | DRSQQKDK-QCYRDLKEVTPENLQM-VKRNFEWVAERVELLLKSESQCRVVVLMGSTSDLGHCE-KIRKA |
D.SQ.K.K...Y..LKEVTP....M.VK........R..LLLKSESQCRVV.L.GSTSDL.HCE.KI.KA | |
Retrocopy | DQSQ*KEK<KSYHNLKEVTPKGVHM<VKEKLSGL-QRIKLLLKSESQCRVVLLTGSTSDLDHCE>KIKKA |
Parental | CGNFGIPCELR-VTSAHKGPDETLRIKAEY |
CGNFGIPCE.R.V..AH..PD.TLRIKAEY | |
Retrocopy | CGNFGIPCEFR<VIPAHREPDKTLRIKAEY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000010577 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000010749 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000013413 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000015242 | 2 retrocopies | |
Homo sapiens | ENSG00000128050 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000024392 | 1 retrocopy | |
Mus musculus | ENSMUSG00000029247 | 6 retrocopies | |
Nomascus leucogenys | ENSNLEG00000008786 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000003575 | 2 retrocopies | |
Procavia capensis | ENSPCAG00000008531 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000016081 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000002101 | 3 retrocopies | |
Tupaia belangeri | ENSTBEG00000006751 | 1 retrocopy |
retro_tbel_3697 ,
|
Tarsius syrichta | ENSTSYG00000010497 | 2 retrocopies | |
Drosophila melanogaster | FBgn0020513 | 1 retrocopy |